Detailed information NTG0912348

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: U0040_RS08000
• Genome accession: NZ_CP140003
• Coordinates: 1621439..1622632 (+)
• Length: 397 a.a.
• NCBI ID: WP_004979812.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain HAMBI_0097
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1616439..1627632

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U0040_RS07985 (U0040_07985)	-	1618053..1618960 (+)	908	Protein_1544	diguanylate cyclase domain-containing protein	-
U0040_RS07990 (U0040_07990)	-	1618975..1619649 (+)	675	WP_373863444.1	EAL domain-containing protein	-
U0040_RS17410	-	1620048..1620194 (-)	147	WP_171254088.1	hypothetical protein	-
U0040_RS07995 (U0040_07995)	-	1620140..1621201 (+)	1062	WP_114836678.1	3-deoxy-7-phosphoheptulonate synthase	-
U0040_RS08000 (U0040_08000)	pilU	1621439..1622632 (+)	1194	WP_004979812.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
U0040_RS08005 (U0040_08005)	-	1622680..1623858 (-)	1179	WP_114836677.1	MFS transporter	-
U0040_RS08010 (U0040_08010)	gcvH	1624118..1624492 (-)	375	WP_004693240.1	glycine cleavage system protein GcvH	-
U0040_RS08015 (U0040_08015)	-	1624564..1625592 (-)	1029	WP_004979806.1	AraC family transcriptional regulator	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 44648.03 Da
• Isoelectric Point: 6.5063

>NTDB_id=912348 U0040_RS08000 WP_004979812.1 1621439..1622632(+) (pilU) [Acinetobacter johnsonii strain HAMBI_0097]
MYSAELLEEARRMMFHMLSKVVEYGGSDLFISADFPPSIKHQGLMKPLGQQNLPSDQTKLFAYSLMNEKQRLEFETELEC
NFAISVPNVSRFRVNVFQQQLHVGMVIRTITAEIPNFTKLQLPTSLKDVIMEKRGLVLVVGGTGSGKSTSLAAMIDHRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
ANNANQALDRIINFFPDERRNQLLMDLSSNMKAIISQRLVRTEDGRGRRAAVEIMLNTPLMSDLILKGNFHELKEVMSKS
RELGMQTFDQALFDLYNQGAIAYEEALRNADSVNELRLQIKLKSSRANPQLSSNSALSFDQAVAEKAKDAEEEKADA

Nucleotide

• Length: 1194 bp

>NTDB_id=912348 U0040_RS08000 WP_004979812.1 1621439..1622632(+) (pilU) [Acinetobacter johnsonii strain HAMBI_0097]
ATGTATTCTGCAGAACTTTTAGAAGAAGCCCGTCGGATGATGTTTCACATGCTCAGCAAAGTGGTTGAGTATGGTGGTTC
AGACTTATTTATATCTGCAGACTTTCCGCCAAGTATTAAGCATCAGGGCCTTATGAAGCCATTGGGTCAACAAAACTTGC
CATCTGATCAGACCAAACTCTTTGCTTATAGTTTAATGAACGAAAAGCAACGATTAGAGTTCGAAACTGAGCTGGAGTGT
AATTTTGCAATTAGCGTTCCCAATGTCTCACGTTTTCGCGTCAATGTTTTTCAGCAGCAACTGCATGTGGGGATGGTGAT
TCGTACGATTACCGCGGAAATTCCTAACTTCACTAAGTTACAACTTCCAACGTCTTTAAAAGACGTAATTATGGAAAAAC
GTGGTTTGGTCCTCGTTGTCGGTGGTACAGGGTCGGGTAAATCGACGTCTTTAGCAGCCATGATTGATCATCGAAATGAA
AACTCGGCAGGGCACATTATTACGGTTGAAGACCCAGTGGAATATGTTCACAAGCATAAGAAATCGATGATTACTCATCG
AGAAGTAGGTGTGGACTGTCACTCTTGGCACAATGCTTTGAAAAATACTTTGCGCCAAGCACCTGATGTCATTTTAATTG
GTGAGATTCGTGACACGGAGACTATGGAGCATGCCATAGCTTTTGCAGAAACAGGCCACTTATGCCTAGGCACATTACAT
GCTAATAATGCAAATCAGGCTTTAGATCGAATTATTAACTTTTTCCCAGACGAACGTCGCAATCAACTTTTGATGGACTT
ATCTTCCAATATGAAGGCGATTATTTCACAGCGTCTGGTGCGAACTGAAGATGGGCGTGGTCGCCGAGCAGCAGTGGAAA
TCATGCTCAATACGCCGTTGATGTCAGACTTGATACTTAAAGGGAATTTCCATGAACTCAAAGAAGTGATGTCGAAGTCA
CGAGAGCTAGGTATGCAGACCTTTGATCAGGCTTTGTTTGATTTATACAATCAAGGTGCAATTGCTTATGAAGAGGCGCT
ACGAAATGCAGACTCGGTCAATGAATTACGTCTACAGATTAAGTTAAAGAGTAGTCGTGCCAACCCGCAGTTAAGCTCAA
ATAGTGCTTTGTCTTTTGATCAAGCGGTTGCTGAAAAAGCCAAAGACGCTGAAGAAGAGAAGGCCGACGCCTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (122-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	59.331	90.428	0.537
pilU	Acinetobacter baylyi ADP1	54.821	91.436	0.501
pilU	Vibrio cholerae strain A1552	50.578	87.154	0.441
pilT	Legionella pneumophila strain Lp02	42.478	85.39	0.363
pilT	Legionella pneumophila strain ERS1305867	42.478	85.39	0.363
pilT	Acinetobacter baylyi ADP1	43.598	82.62	0.36