Detailed information
Bioinformatically predicted
Overview
| Name | comYH | Type | Machinery gene |
| Locus tag | L6411_RS00820 | Genome accession | NZ_AP025333 |
| Coordinates | 126738..127691 (+) | Length | 317 a.a. |
| NCBI ID | WP_237374204.1 | Uniprot ID | - |
| Organism | Streptococcus ruminantium strain GUT-189 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 121738..132691
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L6411_RS00780 (GUT189_01230) | - | 121965..122915 (-) | 951 | WP_155974247.1 | S66 family peptidase | - |
| L6411_RS00785 (GUT189_01240) | comYA | 123076..124026 (+) | 951 | WP_155962599.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| L6411_RS00790 (GUT189_01250) | comYB | 123947..124978 (+) | 1032 | WP_272877484.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| L6411_RS00795 (GUT189_01260) | comYC | 124975..125256 (+) | 282 | WP_237374201.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| L6411_RS00800 (GUT189_01270) | comGD | 125243..125656 (+) | 414 | WP_237374202.1 | competence type IV pilus minor pilin ComGD | - |
| L6411_RS00805 (GUT189_01280) | comYE | 125628..125921 (+) | 294 | WP_155963927.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| L6411_RS00810 (GUT189_01290) | comGF/cglF | 125908..126342 (+) | 435 | WP_237374203.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| L6411_RS00815 (GUT189_01300) | comGG | 126320..126733 (+) | 414 | WP_120171207.1 | competence type IV pilus minor pilin ComGG | - |
| L6411_RS00820 (GUT189_01310) | comYH | 126738..127691 (+) | 954 | WP_237374204.1 | class I SAM-dependent methyltransferase | Machinery gene |
| L6411_RS00825 (GUT189_01320) | - | 127741..128928 (+) | 1188 | WP_024532248.1 | acetate kinase | - |
| L6411_RS00830 (GUT189_01330) | - | 129233..129787 (+) | 555 | WP_024532247.1 | folate family ECF transporter S component | - |
| L6411_RS00835 (GUT189_01340) | - | 129886..131142 (+) | 1257 | WP_237374205.1 | bifunctional folylpolyglutamate synthase/dihydrofolate synthase | - |
| L6411_RS00840 (GUT189_01350) | pepA | 131456..132517 (-) | 1062 | WP_237374206.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 317 a.a. Molecular weight: 35836.94 Da Isoelectric Point: 4.4571
>NTDB_id=91224 L6411_RS00820 WP_237374204.1 126738..127691(+) (comYH) [Streptococcus ruminantium strain GUT-189]
MNFEKIEQVYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHEIDLVARNNQTMKGLDLTKEEWRRSYQFLLIKANQT
EPLQYNHQFTPDSIGFILSFLVDQLISTPRVTILEIGSGTGNLAQTILNASQKKLDYLGIEVDDLLIDLSASIADVMEAE
ISFAQGDAVRPQILKESQVILSDLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDRLKIWLQEQANIVAMIALPPTLFGKAAMAKSIFVLQKQAARALTPFVYPLQSLQDPETVQQFMINFKNWKQENAI
MNFEKIEQVYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVAGQHEIDLVARNNQTMKGLDLTKEEWRRSYQFLLIKANQT
EPLQYNHQFTPDSIGFILSFLVDQLISTPRVTILEIGSGTGNLAQTILNASQKKLDYLGIEVDDLLIDLSASIADVMEAE
ISFAQGDAVRPQILKESQVILSDLPIGYYPDDQIASRYQVASQTEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDRLKIWLQEQANIVAMIALPPTLFGKAAMAKSIFVLQKQAARALTPFVYPLQSLQDPETVQQFMINFKNWKQENAI
Nucleotide
Download Length: 954 bp
>NTDB_id=91224 L6411_RS00820 WP_237374204.1 126738..127691(+) (comYH) [Streptococcus ruminantium strain GUT-189]
ATGAATTTTGAAAAGATTGAACAGGTCTATGACCTGCTATTAGAAAATGTACAGACCATCCAAAATCAGTTGGGTACGAA
TATTTATGATGCCATGATTGAGCAGAATGCAGCCTATGTAGCTGGCCAGCATGAGATTGATTTGGTTGCAAGGAACAACC
AGACTATGAAAGGTTTAGACTTGACCAAGGAAGAATGGCGTCGTTCCTATCAATTCCTCTTAATCAAGGCCAATCAGACG
GAACCTCTTCAGTATAATCATCAATTTACACCAGATTCAATAGGCTTTATCTTGTCATTTTTAGTGGATCAGCTTATTTC
AACTCCACGAGTGACAATCTTAGAAATCGGATCGGGGACAGGAAATTTAGCCCAGACTATTCTCAATGCTAGCCAGAAAA
AACTAGATTATCTTGGTATTGAAGTGGATGACCTTTTGATCGACTTATCAGCCAGTATCGCAGATGTCATGGAGGCGGAA
ATTAGCTTTGCTCAAGGTGATGCGGTGCGTCCGCAGATTTTGAAGGAAAGTCAAGTCATTTTAAGTGATTTGCCGATTGG
CTACTATCCAGATGACCAGATTGCTAGTCGCTATCAGGTAGCCAGTCAGACGGAGCATACCTACGCTCACCATTTGCTCA
TGGAACAATCTCTCAAGTATCTTGAGAAAGATGGATTTGCCATTCTCTTGGCTCCCAATGACCTTTTGACTAGTCCACAA
AGCGACCGATTGAAAATCTGGCTACAGGAACAGGCCAATATTGTAGCTATGATTGCTCTGCCGCCAACCTTATTTGGAAA
AGCTGCCATGGCTAAGTCTATTTTTGTTCTACAAAAACAAGCAGCGAGAGCATTGACTCCCTTTGTTTACCCTTTGCAAA
GTCTCCAAGACCCGGAGACAGTTCAACAGTTTATGATCAATTTTAAAAATTGGAAGCAAGAAAATGCAATTTGA
ATGAATTTTGAAAAGATTGAACAGGTCTATGACCTGCTATTAGAAAATGTACAGACCATCCAAAATCAGTTGGGTACGAA
TATTTATGATGCCATGATTGAGCAGAATGCAGCCTATGTAGCTGGCCAGCATGAGATTGATTTGGTTGCAAGGAACAACC
AGACTATGAAAGGTTTAGACTTGACCAAGGAAGAATGGCGTCGTTCCTATCAATTCCTCTTAATCAAGGCCAATCAGACG
GAACCTCTTCAGTATAATCATCAATTTACACCAGATTCAATAGGCTTTATCTTGTCATTTTTAGTGGATCAGCTTATTTC
AACTCCACGAGTGACAATCTTAGAAATCGGATCGGGGACAGGAAATTTAGCCCAGACTATTCTCAATGCTAGCCAGAAAA
AACTAGATTATCTTGGTATTGAAGTGGATGACCTTTTGATCGACTTATCAGCCAGTATCGCAGATGTCATGGAGGCGGAA
ATTAGCTTTGCTCAAGGTGATGCGGTGCGTCCGCAGATTTTGAAGGAAAGTCAAGTCATTTTAAGTGATTTGCCGATTGG
CTACTATCCAGATGACCAGATTGCTAGTCGCTATCAGGTAGCCAGTCAGACGGAGCATACCTACGCTCACCATTTGCTCA
TGGAACAATCTCTCAAGTATCTTGAGAAAGATGGATTTGCCATTCTCTTGGCTCCCAATGACCTTTTGACTAGTCCACAA
AGCGACCGATTGAAAATCTGGCTACAGGAACAGGCCAATATTGTAGCTATGATTGCTCTGCCGCCAACCTTATTTGGAAA
AGCTGCCATGGCTAAGTCTATTTTTGTTCTACAAAAACAAGCAGCGAGAGCATTGACTCCCTTTGTTTACCCTTTGCAAA
GTCTCCAAGACCCGGAGACAGTTCAACAGTTTATGATCAATTTTAAAAATTGGAAGCAAGAAAATGCAATTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYH | Streptococcus mutans UA140 |
60.759 |
99.685 |
0.606 |
| comYH | Streptococcus mutans UA159 |
60.443 |
99.685 |
0.603 |