Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | U0004_RS05235 | Genome accession | NZ_CP139976 |
| Coordinates | 1164901..1166040 (-) | Length | 379 a.a. |
| NCBI ID | WP_174718092.1 | Uniprot ID | - |
| Organism | Janthinobacterium lividum strain HAMBI_1919 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1159901..1171040
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| U0004_RS05220 (U0004_05220) | glcF | 1160885..1162123 (+) | 1239 | WP_070258773.1 | glycolate oxidase subunit GlcF | - |
| U0004_RS05225 (U0004_05225) | - | 1162116..1164227 (-) | 2112 | WP_070258775.1 | putative bifunctional diguanylate cyclase/phosphodiesterase | - |
| U0004_RS05230 (U0004_05230) | - | 1164414..1164899 (-) | 486 | WP_070258777.1 | glutathione peroxidase | - |
| U0004_RS05235 (U0004_05235) | pilU | 1164901..1166040 (-) | 1140 | WP_174718092.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| U0004_RS05240 (U0004_05240) | pilT | 1166044..1167087 (-) | 1044 | WP_070258779.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| U0004_RS05245 (U0004_05245) | - | 1167158..1167859 (+) | 702 | WP_070258914.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| U0004_RS05250 (U0004_05250) | proC | 1167882..1168712 (+) | 831 | WP_034784843.1 | pyrroline-5-carboxylate reductase | - |
| U0004_RS05255 (U0004_05255) | - | 1168713..1169429 (-) | 717 | WP_115057411.1 | anti-sigma factor domain-containing protein | - |
| U0004_RS05260 (U0004_05260) | - | 1169426..1169983 (-) | 558 | WP_070258918.1 | sigma-70 family RNA polymerase sigma factor | - |
| U0004_RS05265 (U0004_05265) | - | 1170076..1170633 (-) | 558 | WP_034784851.1 | DUF3455 domain-containing protein | - |
Sequence
Protein
Download Length: 379 a.a. Molecular weight: 41064.18 Da Isoelectric Point: 6.9411
>NTDB_id=912185 U0004_RS05235 WP_174718092.1 1164901..1166040(-) (pilU) [Janthinobacterium lividum strain HAMBI_1919]
MQTTHEHYGAMHALLAQMRARGGSDLFITAGFPPAIKLDGKLTLLAGGALDAQQSAGYVRAVMNERQAAEFASSREANFA
ISPDGLGRFRVSAFVQMGQAGMVLRLINTAIPTLDGLGLPSILQDIVMSKRGLVIMVGATGCGKSTTLAAMVGHRNAHSH
GHIITIEDPVEFIHPHGNCIVTQREVGVDTDDWATALKNTLRQAPDVIQIGEIRDRDTMDHAIAFAETGHLCLATLHANN
ANQALDRIINFFPEERRQQLLMDLSLNLKGMISQRLIPSKEGGGRKAALEILLNSPLMSDLIFKGHVHEIKELMKKSREH
GMQTFDQALFDLHEGGAISYEDALRNADSVNDLRLTIKLKGATAPEPPPQTGATKLGLL
MQTTHEHYGAMHALLAQMRARGGSDLFITAGFPPAIKLDGKLTLLAGGALDAQQSAGYVRAVMNERQAAEFASSREANFA
ISPDGLGRFRVSAFVQMGQAGMVLRLINTAIPTLDGLGLPSILQDIVMSKRGLVIMVGATGCGKSTTLAAMVGHRNAHSH
GHIITIEDPVEFIHPHGNCIVTQREVGVDTDDWATALKNTLRQAPDVIQIGEIRDRDTMDHAIAFAETGHLCLATLHANN
ANQALDRIINFFPEERRQQLLMDLSLNLKGMISQRLIPSKEGGGRKAALEILLNSPLMSDLIFKGHVHEIKELMKKSREH
GMQTFDQALFDLHEGGAISYEDALRNADSVNDLRLTIKLKGATAPEPPPQTGATKLGLL
Nucleotide
Download Length: 1140 bp
>NTDB_id=912185 U0004_RS05235 WP_174718092.1 1164901..1166040(-) (pilU) [Janthinobacterium lividum strain HAMBI_1919]
ATGCAGACGACGCACGAACACTATGGCGCCATGCACGCGCTGCTGGCGCAGATGCGCGCACGGGGCGGCTCGGACCTGTT
CATCACGGCCGGCTTTCCGCCCGCCATCAAGCTCGACGGCAAGCTGACGCTGCTGGCGGGAGGCGCGCTCGACGCGCAGC
AATCGGCCGGCTACGTGCGCGCCGTCATGAACGAACGCCAGGCGGCCGAATTCGCGTCCAGCCGCGAAGCCAATTTCGCC
ATCAGCCCGGACGGTCTCGGACGTTTCCGCGTATCCGCCTTCGTGCAGATGGGCCAGGCAGGCATGGTCTTGCGCTTGAT
CAATACCGCCATTCCCACACTCGATGGGCTGGGTTTGCCCTCCATCCTGCAAGACATCGTGATGAGCAAGCGGGGCCTCG
TCATCATGGTGGGCGCCACGGGCTGCGGCAAGTCGACCACGCTGGCGGCCATGGTGGGCCACCGCAACGCGCACAGCCAC
GGCCACATCATCACCATCGAAGACCCCGTGGAATTCATCCATCCGCACGGCAACTGCATCGTCACCCAGCGCGAAGTGGG
CGTCGATACGGACGACTGGGCCACGGCCCTGAAAAACACCCTGCGCCAGGCGCCCGACGTGATACAGATCGGCGAAATAC
GCGACCGCGACACCATGGACCACGCCATCGCGTTTGCCGAGACGGGCCATCTGTGCCTGGCGACCTTGCACGCGAACAAC
GCCAACCAGGCGCTGGACCGCATCATCAATTTCTTCCCCGAAGAGCGGCGCCAGCAATTGCTGATGGACCTGTCGCTCAA
TTTGAAGGGCATGATTTCGCAGCGCTTGATCCCCAGCAAGGAAGGCGGCGGGCGCAAGGCGGCGCTGGAAATCCTGCTCA
ACTCACCGCTGATGAGCGACCTGATCTTCAAGGGCCATGTGCACGAGATCAAGGAACTGATGAAAAAATCGCGCGAGCAT
GGCATGCAAACCTTCGACCAGGCCCTGTTCGACCTGCACGAAGGGGGCGCCATCAGCTATGAAGACGCGCTGCGCAATGC
GGACTCCGTCAACGACCTGCGCCTGACGATCAAACTCAAGGGCGCAACGGCGCCGGAACCGCCCCCGCAAACGGGCGCCA
CCAAACTGGGACTCCTCTGA
ATGCAGACGACGCACGAACACTATGGCGCCATGCACGCGCTGCTGGCGCAGATGCGCGCACGGGGCGGCTCGGACCTGTT
CATCACGGCCGGCTTTCCGCCCGCCATCAAGCTCGACGGCAAGCTGACGCTGCTGGCGGGAGGCGCGCTCGACGCGCAGC
AATCGGCCGGCTACGTGCGCGCCGTCATGAACGAACGCCAGGCGGCCGAATTCGCGTCCAGCCGCGAAGCCAATTTCGCC
ATCAGCCCGGACGGTCTCGGACGTTTCCGCGTATCCGCCTTCGTGCAGATGGGCCAGGCAGGCATGGTCTTGCGCTTGAT
CAATACCGCCATTCCCACACTCGATGGGCTGGGTTTGCCCTCCATCCTGCAAGACATCGTGATGAGCAAGCGGGGCCTCG
TCATCATGGTGGGCGCCACGGGCTGCGGCAAGTCGACCACGCTGGCGGCCATGGTGGGCCACCGCAACGCGCACAGCCAC
GGCCACATCATCACCATCGAAGACCCCGTGGAATTCATCCATCCGCACGGCAACTGCATCGTCACCCAGCGCGAAGTGGG
CGTCGATACGGACGACTGGGCCACGGCCCTGAAAAACACCCTGCGCCAGGCGCCCGACGTGATACAGATCGGCGAAATAC
GCGACCGCGACACCATGGACCACGCCATCGCGTTTGCCGAGACGGGCCATCTGTGCCTGGCGACCTTGCACGCGAACAAC
GCCAACCAGGCGCTGGACCGCATCATCAATTTCTTCCCCGAAGAGCGGCGCCAGCAATTGCTGATGGACCTGTCGCTCAA
TTTGAAGGGCATGATTTCGCAGCGCTTGATCCCCAGCAAGGAAGGCGGCGGGCGCAAGGCGGCGCTGGAAATCCTGCTCA
ACTCACCGCTGATGAGCGACCTGATCTTCAAGGGCCATGTGCACGAGATCAAGGAACTGATGAAAAAATCGCGCGAGCAT
GGCATGCAAACCTTCGACCAGGCCCTGTTCGACCTGCACGAAGGGGGCGCCATCAGCTATGAAGACGCGCTGCGCAATGC
GGACTCCGTCAACGACCTGCGCCTGACGATCAAACTCAAGGGCGCAACGGCGCCGGAACCGCCCCCGCAAACGGGCGCCA
CCAAACTGGGACTCCTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
63.173 |
93.14 |
0.588 |
| pilU | Acinetobacter baylyi ADP1 |
59.366 |
91.557 |
0.544 |
| pilU | Vibrio cholerae strain A1552 |
56.851 |
90.501 |
0.515 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
43.425 |
86.28 |
0.375 |
| pilT | Acinetobacter baylyi ADP1 |
41.515 |
87.071 |
0.361 |