Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   L6419_RS09975 Genome accession   NZ_AP025332
Coordinates   2113214..2114389 (+) Length   391 a.a.
NCBI ID   WP_155963394.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-184     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2108214..2119389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS09935 (GUT184_19250) - 2108494..2109738 (+) 1245 WP_155963396.1 replication initiation factor domain-containing protein -
  L6419_RS09940 (GUT184_19260) - 2109801..2110139 (+) 339 WP_029186211.1 DUF771 domain-containing protein -
  L6419_RS09945 (GUT184_19270) - 2110202..2111323 (+) 1122 WP_014638877.1 site-specific integrase -
  L6419_RS09965 (GUT184_19280) - 2111834..2112518 (-) 685 Protein_1924 YoaK family protein -
  L6419_RS09970 (GUT184_19290) rlmH 2112543..2113022 (-) 480 WP_024531474.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  L6419_RS09975 (GUT184_19300) htrA 2113214..2114389 (+) 1176 WP_155963394.1 S1C family serine protease Regulator
  L6419_RS09980 (GUT184_19310) spo0J 2114450..2115208 (+) 759 WP_237375448.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 391 a.a.        Molecular weight: 41627.07 Da        Isoelectric Point: 8.9096

>NTDB_id=91208 L6419_RS09975 WP_155963394.1 2113214..2114389(+) (htrA) [Streptococcus ruminantium strain GUT-184]
MKKYLKFTILFAVGLLGGFVGSFMTASFFQPQAQQQANSTITNVSKVQYNNETSTTKAVEKVQNAVVSVINYQKSANNSL
RSIFGNIDTPDEPVVAGEGSGVIYKKDDKYAYVVTNTHVINNAEKIDILLTSGEKVRGELVGSDTYSDIAVIRIPADKVT
TVAEFANSNTIKVGEPAIAIGSPLGSVYANTVTQGIISSLSRTITSQSEDGQTISTNAIQTDAAINPGNSGGPLINIKGQ
VVGINSSKKSTSRSGVAIEGMGFAIPANDVVAIINQIEKNGKVIRPALGFQLVNLTDLSTGQLEKAGLSDTKLTSGVVVV
STQKGLPADGKLETFDVITEINGEAVQNKSDLQSILYKHKIGDTIKVTYYRNNKKQTVDIKLTHSTEQLSQ

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=91208 L6419_RS09975 WP_155963394.1 2113214..2114389(+) (htrA) [Streptococcus ruminantium strain GUT-184]
ATGAAAAAATATTTGAAATTTACTATTCTATTTGCTGTTGGTCTTTTGGGTGGTTTTGTTGGTTCTTTCATGACTGCCTC
TTTCTTTCAACCACAAGCACAACAACAGGCAAATTCTACTATTACAAATGTCAGCAAGGTGCAATACAATAATGAGACCT
CTACTACAAAAGCAGTAGAAAAGGTGCAAAATGCTGTTGTTTCAGTAATTAACTATCAAAAATCAGCAAACAATAGCCTA
CGCTCCATCTTCGGAAATATTGATACACCGGATGAACCTGTAGTAGCTGGAGAAGGTTCGGGTGTTATCTATAAAAAAGA
CGATAAATATGCCTACGTTGTTACCAATACGCATGTTATCAATAACGCAGAAAAAATAGATATTCTTCTAACTTCAGGAG
AAAAGGTCAGAGGAGAACTTGTTGGTTCTGACACTTATTCTGACATAGCTGTAATAAGGATTCCTGCTGATAAGGTCACT
ACTGTTGCCGAATTTGCTAACTCCAATACTATCAAGGTCGGTGAACCTGCTATCGCTATCGGTAGCCCACTTGGTAGTGT
CTATGCTAATACTGTTACACAAGGTATTATTTCTAGTTTGAGTAGAACTATCACCTCACAATCAGAAGATGGACAAACTA
TCTCTACCAACGCTATCCAAACAGATGCAGCCATTAACCCAGGTAATTCAGGTGGTCCACTGATAAATATTAAAGGACAA
GTTGTGGGGATCAATTCAAGTAAAAAGAGTACATCGAGATCCGGTGTTGCTATAGAAGGGATGGGCTTTGCTATTCCTGC
TAATGATGTAGTAGCTATTATCAATCAAATTGAGAAAAATGGTAAAGTTATCCGACCTGCTCTCGGTTTCCAACTAGTCA
ATTTGACAGATTTGTCAACTGGACAATTAGAAAAAGCTGGATTATCAGATACCAAATTAACATCTGGTGTTGTAGTTGTT
TCAACGCAGAAGGGGTTACCTGCTGATGGAAAACTTGAAACCTTTGATGTTATCACTGAGATTAACGGTGAAGCTGTTCA
AAATAAGAGCGATCTTCAAAGTATCCTCTACAAGCATAAAATTGGTGATACGATTAAGGTTACCTACTATCGTAACAATA
AAAAGCAAACAGTTGACATCAAGTTGACACATTCTACGGAGCAACTCAGTCAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

59.494

100

0.601

  htrA Streptococcus gordonii str. Challis substr. CH1

59.184

100

0.593

  htrA Streptococcus pneumoniae Rx1

55.784

99.488

0.555

  htrA Streptococcus pneumoniae D39

55.784

99.488

0.555

  htrA Streptococcus pneumoniae R6

55.784

99.488

0.555

  htrA Streptococcus pneumoniae TIGR4

55.784

99.488

0.555

  htrA Streptococcus mitis NCTC 12261

55.784

99.488

0.555


Multiple sequence alignment