Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   L6419_RS09980 Genome accession   NZ_AP025332
Coordinates   2114450..2115208 (+) Length   252 a.a.
NCBI ID   WP_237375448.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-184     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2109450..2120208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6419_RS09940 (GUT184_19260) - 2109801..2110139 (+) 339 WP_029186211.1 DUF771 domain-containing protein -
  L6419_RS09945 (GUT184_19270) - 2110202..2111323 (+) 1122 WP_014638877.1 site-specific integrase -
  L6419_RS09965 (GUT184_19280) - 2111834..2112518 (-) 685 Protein_1924 YoaK family protein -
  L6419_RS09970 (GUT184_19290) rlmH 2112543..2113022 (-) 480 WP_024531474.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  L6419_RS09975 (GUT184_19300) htrA 2113214..2114389 (+) 1176 WP_155963394.1 S1C family serine protease Regulator
  L6419_RS09980 (GUT184_19310) spo0J 2114450..2115208 (+) 759 WP_237375448.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28811.15 Da        Isoelectric Point: 9.5374

>NTDB_id=91209 L6419_RS09980 WP_237375448.1 2114450..2115208(+) (spo0J) [Streptococcus ruminantium strain GUT-184]
MEELRTLNISEIHPNPYQPRVHFDETKLAELAQSIRENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTEIPAVVKD
LTDDDLLRQAIIENLQRSDLNPIEEAQSYNNLINKGLTHDKIAQIMGKSRPYISNILRLLNLSTQAKKAVEEGKISQGHA
RQLLSLSEEKQAEWIQIILEKDLSVHALEKVLSNKKKKQVRQNNPFLKEQEIIISQHLGTTTKILQKKNGKGEIRIHFDN
LDEFERIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=91209 L6419_RS09980 WP_237375448.1 2114450..2115208(+) (spo0J) [Streptococcus ruminantium strain GUT-184]
ATGGAAGAATTACGTACCCTAAATATTTCAGAGATACATCCAAATCCCTATCAACCAAGAGTTCATTTTGATGAAACCAA
ACTGGCTGAATTAGCGCAATCTATCAGAGAAAATGGATTGATTCAACCGATTATTGTAAGAAAATCGTCCATTATTGGAT
ACGAATTATTGGCTGGAGAAAGAAGATTACGCGCCAGTCAATTAGCTGGTCTAACTGAAATACCGGCCGTTGTAAAAGAT
TTAACTGATGATGATTTACTCCGTCAGGCAATTATAGAAAACCTACAACGCTCAGATTTAAATCCTATTGAAGAGGCGCA
ATCTTATAATAATTTGATAAATAAAGGATTGACACATGATAAAATTGCCCAAATTATGGGAAAATCAAGACCTTATATCA
GTAATATATTGCGACTCTTAAACTTATCCACTCAAGCAAAAAAAGCTGTAGAAGAAGGAAAAATTTCACAGGGGCACGCG
CGACAATTACTCTCACTTTCCGAGGAAAAACAAGCTGAATGGATTCAAATCATTTTAGAAAAAGATTTAAGTGTGCACGC
GCTTGAAAAAGTATTGTCCAATAAAAAGAAGAAACAAGTTAGACAGAACAATCCATTTTTAAAAGAACAAGAGATCATTA
TTAGCCAGCATCTTGGAACAACTACAAAAATTCTCCAGAAAAAAAATGGGAAAGGGGAGATTCGGATTCATTTTGATAAT
CTAGATGAATTTGAAAGAATTATCAACAGTTTAAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-192)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.545

100

0.548

Multiple sequence alignment