Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   U0450_RS02910 Genome accession   NZ_CP139863
Coordinates   580437..581024 (+) Length   195 a.a.
NCBI ID   WP_000205166.1    Uniprot ID   Q9ETN5
Organism   Streptococcus pneumoniae strain 15P2112     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 575437..586024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0450_RS02870 - 575934..576887 (+) 954 WP_001155321.1 IS30-like element ISSpn8 family transposase -
  U0450_RS02875 - 576932..577737 (-) 806 Protein_571 IS5 family transposase -
  U0450_RS02880 - 577940..578343 (-) 404 Protein_572 immunity protein -
  U0450_RS02885 - 578340..578504 (-) 165 WP_000727118.1 hypothetical protein -
  U0450_RS02890 - 578801..578920 (-) 120 WP_050233614.1 PncF family bacteriocin immunity protein -
  U0450_RS02895 blpU 578923..579153 (-) 231 WP_050243503.1 bacteriocin-like peptide BlpU -
  U0450_RS02900 blpJ 579222..579491 (-) 270 WP_001093248.1 bacteriocin-like peptide BlpJ -
  U0450_RS02905 blpI 579958..580155 (-) 198 WP_001093259.1 bacteriocin-like peptide BlpI -
  U0450_RS02910 comA/nlmT 580437..581024 (+) 588 WP_000205166.1 cysteine peptidase family C39 domain-containing protein Regulator
  U0450_RS02915 blpA 580951..582219 (+) 1269 Protein_579 peptide cleavage/export ABC transporter BlpA -
  U0450_RS02920 comA/nlmT 582429..582593 (+) 165 WP_306420852.1 hypothetical protein Regulator
  U0450_RS02925 - 582604..583965 (+) 1362 WP_050211505.1 bacteriocin secretion accessory protein -
  U0450_RS02930 blpC 584022..584177 (+) 156 WP_061450964.1 quorum-sensing system pheromone BlpC -
  U0450_RS02935 - 584221..585561 (-) 1341 WP_127244994.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22270.71 Da        Isoelectric Point: 9.6188

>NTDB_id=911542 U0450_RS02910 WP_000205166.1 580437..581024(+) (comA/nlmT) [Streptococcus pneumoniae strain 15P2112]
MTSYKRTFVPQIDARDCGVAALASIAKFYGSDFSLAHLRELAKTNKEGTTALGIVKAADEMGFETRPVQADKTLFDMSDV
PYPFIVHVNKEGKLQHYYVVYQTKKDYLIIGDPDPSVKITKMSKERFFYEWTGVAIFLATKPSYQPHKDKKNGLLSKLPS
SDFQTKISHCLHCSLKLIGHYYQYRWFLLSPRNLG

Nucleotide


Download         Length: 588 bp        

>NTDB_id=911542 U0450_RS02910 WP_000205166.1 580437..581024(+) (comA/nlmT) [Streptococcus pneumoniae strain 15P2112]
ATGACTTCTTATAAACGTACATTTGTTCCTCAAATAGATGCGAGAGACTGTGGTGTCGCTGCCTTAGCCTCGATTGCTAA
ATTCTATGGTTCAGATTTTTCTCTAGCTCACTTGAGAGAACTTGCAAAGACCAATAAAGAAGGGACGACTGCTCTTGGCA
TTGTAAAAGCCGCTGATGAAATGGGCTTTGAAACAAGACCTGTTCAAGCAGATAAAACGCTCTTTGACATGAGTGATGTC
CCCTATCCATTTATCGTTCACGTTAACAAAGAAGGAAAACTCCAACATTACTATGTTGTCTATCAAACAAAGAAAGACTA
TCTGATTATTGGTGATCCTGACCCTTCTGTAAAAATCACTAAAATGTCAAAAGAACGCTTTTTCTATGAATGGACTGGAG
TAGCTATTTTTCTAGCTACCAAACCCAGCTATCAACCCCATAAAGATAAAAAGAATGGTCTACTAAGCAAGCTTCCTTCC
TCTGATTTTCAAACAAAAATCTCTCATTGCTTACATTGTTCTCTCAAGCTTATTGGTCACTATTATCAATATAGGTGGTT
CTTATTATCTCCAAGGAATCTTGGATGA

Domains

Predicted by InterProScan.

Peptidase C39 family (Peptidase_C39)

(7-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

59.89

93.333

0.559
  comA Streptococcus mitis NCTC 12261

54.891

94.359

0.518
  comA Streptococcus mitis SK321

54.348

94.359

0.513
  comA Streptococcus pneumoniae TIGR4

53.804

94.359

0.508
  comA Streptococcus pneumoniae Rx1

53.804

94.359

0.508
  comA Streptococcus pneumoniae D39

53.804

94.359

0.508
  comA Streptococcus pneumoniae R6

53.804

94.359

0.508
  comA Streptococcus gordonii str. Challis substr. CH1

52.717

94.359

0.497