Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ABVR75_RS02895 Genome accession   NZ_CP159464
Coordinates   568922..571774 (+) Length   950 a.a.
NCBI ID   WP_099960179.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei strain CBA3649     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 563922..576774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVR75_RS02880 (ABVR75_02880) - 564220..565944 (+) 1725 WP_112217603.1 phospho-sugar mutase -
  ABVR75_RS02885 (ABVR75_02885) - 566069..566701 (+) 633 WP_025016314.1 YfbR-like 5'-deoxynucleotidase -
  ABVR75_RS02890 (ABVR75_02890) uvrB 566909..568912 (+) 2004 WP_011374231.1 excinuclease ABC subunit UvrB Machinery gene
  ABVR75_RS02895 (ABVR75_02895) uvrA 568922..571774 (+) 2853 WP_099960179.1 excinuclease ABC subunit UvrA Machinery gene
  ABVR75_RS02900 (ABVR75_02900) - 571896..572432 (+) 537 WP_016264747.1 DUF308 domain-containing protein -
  ABVR75_RS02905 (ABVR75_02905) rapZ 572558..573442 (+) 885 WP_076632190.1 RNase adapter RapZ -
  ABVR75_RS02910 (ABVR75_02910) - 573439..574473 (+) 1035 WP_099960180.1 YvcK family protein -
  ABVR75_RS02915 (ABVR75_02915) whiA 574476..575420 (+) 945 WP_099960181.1 DNA-binding protein WhiA -
  ABVR75_RS02920 (ABVR75_02920) - 575512..575967 (+) 456 WP_035146456.1 MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 950 a.a.        Molecular weight: 104662.91 Da        Isoelectric Point: 5.8519

>NTDB_id=911543 ABVR75_RS02895 WP_099960179.1 568922..571774(+) (uvrA) [Latilactobacillus sakei subsp. sakei strain CBA3649]
MANDKIVIHGARAHNLKDIDVTIPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPDVDSIDG
LSPAISIDQKTTSKNPRSTVGTVTEINDYLRLLWARVGQPICPNDGTEISSQSVEQMVDRVLALPERTKLQIMSPIVRGK
KGQHKKIFEKIQREGYVRVQVDGEVMDVSTDLELDKNKKHDINIVVDRIVVKDGVRSRLFDSFEAALRLSDGYATADVID
GEQLLFSEHYACPICGFTVGALEPRLFSFNAPFGACPECDGLGLKLEVDTDLVVPDTSKTLREGAIAPWNPISSQYYPQM
LEQACTAFKIDMDRPFSKLTPRQKDIILNGSQGKEFHFHYENDFGGVRDVEVPFEGVLSNIDRRYRETNSDFTRTQMRTY
MTELTCQTCHGKRLNRQALAVKVGGQDIAEVSDNAIKDGLPFFDNLELSEKDQVIAKPILKEVHDRLTFLINVGLDYLTL
SRSAGTLSGGEAQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIGSLKKMRDLGNTLIVVEHDEDTMRAADYLIDI
GPGAGDLGGEVMAAGTPTEVEQNPNSLTGRYLAGQDYIPVPLKRRQGNGKKVRVTGAAENNLKDLTVDFPLGEFVAVTGV
SGSGKSTLVNTILKKALAQKMNRNSAKPGQYKTITGYQNLEKLINIDQSPIGRTPRSNPATYTGVFDNVRDLFAQTNEAK
LRGYKKGRFSFNVKGGRCEACKGDGIIKIEMNFLPDVYVPCEICHGSRYNSETLEVVYKGKNIAEILDMTVSEATEFFEN
IPKIARKLQTIVDVGLGYVTLGQSATTLSGGEAQRMKLASELQKQSTGKNLYILDEPTTGLHTDDIKRLLGVLERLVDEG
NTILVIEHNLDVIKTADHIIDLGPEGGDKGGTIVATGTPETLVNVAESYTGRYLKPILERDTARTLAAQE

Nucleotide


Download         Length: 2853 bp        

>NTDB_id=911543 ABVR75_RS02895 WP_099960179.1 568922..571774(+) (uvrA) [Latilactobacillus sakei subsp. sakei strain CBA3649]
ATGGCAAATGATAAGATAGTAATTCACGGCGCACGCGCCCATAATTTAAAGGATATCGACGTTACGATTCCAAGAGATAA
GTTAGTGGTCATCACCGGGTTATCTGGTTCTGGGAAGAGTTCTTTAGCATTTGATACGTTATATGCAGAAGGACAACGGC
GCTATGTTGAGAGTTTATCAGCATACGCGCGTCAGTTCTTAGGGCAAATGGATAAGCCGGATGTTGATTCAATTGACGGG
TTAAGTCCAGCAATCTCGATTGACCAAAAAACGACCTCTAAAAACCCACGTTCAACAGTCGGGACAGTCACTGAAATCAA
TGACTACCTCCGCTTATTGTGGGCCCGAGTTGGCCAACCCATCTGTCCGAATGATGGCACTGAAATCAGTAGTCAATCCG
TAGAACAAATGGTTGACCGGGTATTGGCTTTACCAGAACGGACTAAACTCCAAATTATGTCACCGATTGTTCGTGGCAAA
AAAGGGCAACACAAAAAAATCTTCGAGAAGATTCAGCGTGAAGGTTACGTTCGTGTCCAAGTGGATGGCGAAGTAATGGA
TGTTAGCACGGATTTAGAATTAGATAAAAATAAGAAACATGATATCAATATTGTTGTTGATCGAATCGTCGTTAAAGACG
GTGTTCGGTCACGGTTATTTGATTCGTTTGAAGCAGCCTTGAGATTATCTGATGGGTATGCGACGGCTGATGTGATTGAC
GGCGAACAACTCTTGTTTTCTGAACATTATGCTTGTCCAATCTGTGGCTTTACGGTTGGGGCATTAGAACCACGGTTATT
CTCATTTAACGCGCCATTTGGGGCTTGTCCTGAATGTGATGGCCTAGGTTTAAAACTAGAAGTTGATACGGACCTCGTTG
TCCCAGATACAAGTAAAACATTGCGTGAAGGAGCGATTGCGCCTTGGAATCCAATCAGTTCGCAATACTATCCACAAATG
TTAGAACAAGCTTGCACGGCCTTTAAAATCGATATGGACCGTCCTTTCAGTAAGTTGACACCTCGCCAAAAAGATATCAT
CTTAAACGGCTCACAAGGCAAAGAATTCCACTTCCATTATGAGAATGATTTTGGTGGCGTTCGCGATGTTGAAGTCCCTT
TTGAAGGGGTTCTCAGCAATATTGACCGTCGTTATCGTGAAACGAATAGTGATTTCACACGGACGCAGATGCGGACCTAT
ATGACCGAATTAACGTGTCAAACTTGTCATGGTAAACGATTAAATCGTCAAGCTTTAGCAGTTAAAGTGGGTGGTCAAGA
TATCGCCGAAGTTTCAGACAATGCAATCAAGGATGGTCTCCCATTCTTTGACAATCTTGAACTTTCTGAAAAAGATCAAG
TGATTGCGAAACCCATTTTGAAAGAAGTTCATGATCGCCTGACTTTCTTGATTAATGTCGGCTTAGACTACTTAACGTTG
AGTCGGTCAGCTGGGACACTTTCTGGTGGGGAAGCGCAACGAATTCGTTTGGCCACTCAAATTGGGTCGAACTTATCTGG
CGTGCTTTATATCTTAGATGAACCTTCAATCGGGTTGCATCAACGCGACAATGATCGCTTAATCGGTTCTTTGAAGAAGA
TGCGCGATTTAGGGAACACCTTAATCGTGGTTGAACATGATGAAGATACGATGCGAGCAGCCGATTATTTGATCGATATT
GGCCCAGGTGCTGGGGATCTCGGCGGGGAAGTGATGGCCGCCGGGACACCAACGGAAGTCGAACAAAATCCTAATTCCTT
AACGGGCCGTTATTTAGCGGGGCAGGATTATATTCCGGTACCATTAAAACGACGCCAAGGAAATGGCAAAAAGGTGCGGG
TAACGGGCGCTGCCGAAAATAATTTAAAAGATTTGACGGTTGATTTTCCATTAGGTGAATTTGTCGCCGTGACTGGTGTT
TCTGGTTCTGGTAAATCAACATTAGTGAATACGATTTTGAAGAAAGCCCTTGCGCAAAAGATGAATCGTAATTCAGCTAA
ACCGGGTCAATATAAGACCATCACAGGTTATCAAAACCTTGAGAAGTTGATTAATATCGACCAAAGTCCAATTGGCCGCA
CACCGCGGAGTAACCCAGCCACTTATACCGGTGTCTTCGATAATGTCCGAGATTTATTCGCACAAACCAATGAAGCGAAG
TTACGGGGTTACAAGAAGGGCCGCTTTAGTTTTAATGTGAAGGGTGGTCGCTGTGAAGCCTGCAAGGGTGACGGGATTAT
CAAAATCGAAATGAATTTCTTACCGGATGTCTATGTCCCTTGTGAAATTTGTCATGGTAGTCGTTATAATTCGGAAACTT
TAGAAGTGGTTTATAAAGGTAAGAACATTGCCGAAATCTTGGATATGACCGTTTCTGAAGCAACTGAATTCTTCGAAAAC
ATTCCTAAGATTGCTCGTAAACTACAAACAATTGTCGATGTTGGTTTAGGTTATGTGACATTAGGCCAATCAGCAACAAC
CTTATCTGGTGGGGAAGCCCAACGGATGAAATTGGCTTCTGAATTGCAAAAACAATCAACGGGTAAGAATTTGTATATCT
TAGACGAACCAACAACAGGTTTGCATACGGATGATATTAAACGGTTGTTAGGGGTCTTAGAACGGTTAGTTGATGAAGGC
AACACTATTTTAGTCATTGAGCATAACCTTGACGTGATTAAAACGGCTGATCATATCATTGATTTAGGACCAGAAGGTGG
CGACAAAGGTGGTACGATCGTTGCGACCGGCACACCTGAAACATTGGTGAACGTCGCAGAAAGCTATACGGGACGTTATT
TGAAACCAATTTTAGAACGTGATACAGCGCGTACACTAGCGGCACAAGAATAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(132-237)

UvrA DNA-binding domain (UvrA_DNA-bind)

(289-398)

ABC transporter (ABC_tran)

(622-858)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

75.664

99.053

0.749
  uvrA Streptococcus pneumoniae TIGR4

75.664

99.053

0.749
  uvrA Streptococcus pneumoniae D39

75.664

99.053

0.749