Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   U0448_RS04325 Genome accession   NZ_CP139860
Coordinates   843761..844174 (-) Length   137 a.a.
NCBI ID   WP_000265631.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 21011     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 838761..849174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0448_RS04295 - 839456..840280 (-) 825 WP_219336202.1 membrane protein insertase YidC -
  U0448_RS04300 rnpA 840255..840626 (-) 372 WP_000739246.1 ribonuclease P protein component -
  U0448_RS04305 - 840643..840774 (-) 132 WP_000768904.1 hypothetical protein -
  U0448_RS04310 - 840775..841965 (-) 1191 WP_000167766.1 acetate kinase -
  U0448_RS04315 comYH 842016..842969 (-) 954 WP_000345100.1 class I SAM-dependent methyltransferase Machinery gene
  U0448_RS04320 - 843030..843624 (-) 595 Protein_822 class I SAM-dependent methyltransferase -
  U0448_RS04325 comGG/cglG 843761..844174 (-) 414 WP_000265631.1 competence type IV pilus minor pilin ComGG Machinery gene
  U0448_RS04330 comGF/cglF 844152..844613 (-) 462 WP_000250531.1 competence type IV pilus minor pilin ComGF Machinery gene
  U0448_RS04335 comGE/cglE 844576..844878 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  U0448_RS04340 comGD/cglD 844841..845245 (-) 405 WP_000588024.1 competence type IV pilus minor pilin ComGD Machinery gene
  U0448_RS04345 comGC/cglC 845238..845564 (-) 327 WP_000738630.1 comG operon protein ComGC Machinery gene
  U0448_RS04350 comGB/cglB 845566..846582 (-) 1017 WP_081570974.1 competence type IV pilus assembly protein ComGB Machinery gene
  U0448_RS04355 comGA/cglA/cilD 846530..847471 (-) 942 WP_000249573.1 competence type IV pilus ATPase ComGA Machinery gene
  U0448_RS04360 - 847547..847912 (-) 366 WP_000286415.1 DUF1033 family protein -
  U0448_RS04365 - 848063..849121 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15892.33 Da        Isoelectric Point: 10.2476

>NTDB_id=911332 U0448_RS04325 WP_000265631.1 843761..844174(-) (comGG/cglG) [Streptococcus pneumoniae strain 21011]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKVEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=911332 U0448_RS04325 WP_000265631.1 843761..844174(-) (comGG/cglG) [Streptococcus pneumoniae strain 21011]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGTGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

86.131

100

0.861

  comGG/cglG Streptococcus pneumoniae Rx1

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae D39

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae R6

94.872

85.401

0.81

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

85.401

0.81

  comGG/cglG Streptococcus mitis NCTC 12261

90.909

88.321

0.803

  comYG Streptococcus mutans UA140

39.552

97.81

0.387

  comYG Streptococcus mutans UA159

39.552

97.81

0.387