Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABQ274_RS03540 Genome accession   NZ_CP159281
Coordinates   758246..760213 (+) Length   655 a.a.
NCBI ID   WP_228777594.1    Uniprot ID   -
Organism   Lactococcus lactis strain FNZ339     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 753246..765213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ274_RS03515 (ABQ274_03515) glyQ 753762..754715 (-) 954 WP_003130667.1 glycine--tRNA ligase subunit alpha -
  ABQ274_RS03520 (ABQ274_03520) - 755000..755752 (-) 753 WP_010905753.1 bifunctional metallophosphatase/5'-nucleotidase -
  ABQ274_RS03525 (ABQ274_03525) - 755862..756881 (-) 1020 WP_023164065.1 DUF475 domain-containing protein -
  ABQ274_RS03530 (ABQ274_03530) - 756929..757426 (-) 498 WP_003130662.1 VanZ family protein -
  ABQ274_RS03535 (ABQ274_03535) - 757560..758189 (-) 630 WP_003130660.1 YigZ family protein -
  ABQ274_RS03540 (ABQ274_03540) comFA 758246..760213 (+) 1968 WP_228777594.1 helicase-related protein Machinery gene
  ABQ274_RS03545 (ABQ274_03545) - 760247..760825 (-) 579 WP_003130655.1 nucleotidyltransferase family protein -
  ABQ274_RS03550 (ABQ274_03550) - 760839..761294 (-) 456 WP_003130653.1 diacylglycerol kinase -
  ABQ274_RS03555 (ABQ274_03555) ybeY 761278..761766 (-) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  ABQ274_RS03560 (ABQ274_03560) - 761918..762397 (-) 480 WP_353727517.1 NUDIX hydrolase -
  ABQ274_RS03565 (ABQ274_03565) - 762455..763408 (-) 954 WP_023189344.1 PhoH family protein -
  ABQ274_RS03570 (ABQ274_03570) - 763525..765057 (-) 1533 WP_003130647.1 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 75601.12 Da        Isoelectric Point: 9.7651

>NTDB_id=911152 ABQ274_RS03540 WP_228777594.1 758246..760213(+) (comFA) [Lactococcus lactis strain FNZ339]
MSTNQEKLFGRLLLKNDILQLIKNTDKISVSKIFSNFLLETKVNPILGMTSISSNKIKCNRCGTVHIKNSVKLPIGVFYC
PSCIQLGRVRSDEFLYFLPQKNFPKKSYINWSGKLTENQKSISNALCQEINSHQQIIVQAVTGAGKTEMIYQVIEQILES
GGVVGLASPRIDVCLELHQRLSRDFSCKIPLLYHDGDSYFRAPLIIMTSHQLLRFKEAFDLLIIDEVDAFPFRDNEMLYV
AAEKARKIEGNLIYLTATSTDKLEKDIKKQKLYPLFLPRRFHNFPLVVPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIEF
GQEFAKQLQLKFPKEKIASVASTTKDRLEIVKAFRNKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPTGLVSFFITENPKQCVRQLEKSKNEPTGRFFMIKCLLCSRNIAQNFLFSELFLLKSPQNLLCSKCQKNFEKI
PEAHCPCCCKPNVHEICTDCQNWEKRGYKIRHQAIFHYNQAMKDYFSQYKFVGDYRLYQIFEPYFKNISQKSPLVPIPIS
PKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKERLESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQIL
KEAGVHEIRSFSLCR

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=911152 ABQ274_RS03540 WP_228777594.1 758246..760213(+) (comFA) [Lactococcus lactis strain FNZ339]
ATGAGCACTAATCAAGAAAAGTTATTTGGCCGTTTATTATTAAAAAATGATATTTTGCAACTTATAAAAAATACTGACAA
GATTTCTGTCAGTAAAATTTTTAGTAATTTTTTGTTAGAAACGAAGGTGAATCCAATTTTGGGAATGACTTCAATTTCTT
CCAATAAAATAAAATGCAACCGTTGTGGGACTGTTCATATAAAAAATTCTGTCAAACTTCCAATTGGTGTATTTTACTGT
CCAAGTTGTATTCAATTAGGTCGAGTCCGCTCCGATGAATTCTTGTACTTTCTGCCACAAAAGAATTTCCCAAAGAAATC
ATATATAAACTGGTCTGGAAAACTGACAGAGAATCAAAAATCAATTTCAAATGCCCTTTGTCAGGAAATTAATTCTCATC
AGCAAATAATTGTCCAAGCTGTGACTGGAGCTGGAAAAACTGAAATGATTTATCAAGTCATTGAGCAAATTTTAGAAAGC
GGTGGGGTTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGTCTTGAACTTCATCAGCGATTATCACGTGATTTTTCCTG
TAAGATTCCACTCTTATATCATGATGGCGACAGCTATTTCCGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GTTTCAAGGAAGCTTTTGATTTGCTGATTATTGATGAAGTTGATGCCTTTCCCTTTAGAGATAATGAAATGCTTTATGTT
GCGGCAGAAAAAGCAAGAAAAATAGAAGGAAATTTAATATATTTGACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAAAAGCAAAAACTCTATCCTTTGTTTCTCCCGCGTCGTTTTCACAATTTCCCTTTAGTGGTGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCTCTTCTTATTTTTGCTGCTGAAATTGAATTT
GGACAAGAATTTGCAAAACAACTACAATTGAAATTTCCTAAAGAAAAAATTGCTTCCGTTGCTTCAACAACAAAAGATAG
ATTGGAAATTGTTAAAGCTTTTAGAAATAAAGAAATTACTATTTTAATAGCGACATCAATTCTTGAACGGGGAGTCACTT
TTCCAAATGTTGATGTTTTTGTCATCAACAGTGAGCACCCAAACTTCACTAAATCCGCACTGATACAAATGGCTGGACGT
GTGGGTCGTAGTCCTGAACGTCCAACAGGCTTAGTTAGTTTTTTCATTACGGAAAATCCAAAGCAATGTGTCAGGCAGTT
AGAGAAATCAAAAAATGAACCAACTGGGAGGTTTTTCATGATAAAGTGTTTGCTTTGTTCAAGAAATATTGCTCAAAACT
TTCTATTTAGTGAACTTTTCCTACTCAAAAGTCCTCAAAATCTTTTATGTTCTAAATGTCAAAAAAATTTTGAAAAGATC
CCTGAAGCTCACTGTCCTTGCTGCTGTAAGCCAAATGTCCATGAGATCTGTACTGATTGTCAAAATTGGGAAAAAAGAGG
ATACAAAATCAGACATCAGGCAATTTTTCACTACAATCAAGCAATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAG
ATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAATATTTCCCAAAAATCTCCTTTGGTTCCAATTCCTATTTCA
CCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTTTTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAA
AGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGATTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGC
TAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATACAACAGGTACCACCTTATATCACGCATCACAAATTCTA
AAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCCGTTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(300-403)

Type III restriction enzyme, res subunit (ResIII)

(114-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

71.25

61.069

0.435