Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   U0542_RS08755 Genome accession   NZ_CP139831
Coordinates   1654770..1655297 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain Nord12-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1649770..1660297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS08735 (U0542_08735) - 1649959..1650834 (-) 876 WP_000218810.1 hypothetical protein -
  U0542_RS08740 (U0542_08740) aroB 1650850..1651932 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  U0542_RS08745 (U0542_08745) aroK 1651961..1652530 (-) 570 WP_000643712.1 shikimate kinase AroK -
  U0542_RS08750 (U0542_08750) pilQ 1652542..1654707 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  U0542_RS08755 (U0542_08755) pilP 1654770..1655297 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  U0542_RS08760 (U0542_08760) pilO 1655308..1656048 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  U0542_RS08765 (U0542_08765) pilN 1656045..1656686 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  U0542_RS08770 (U0542_08770) pilM 1656686..1657744 (-) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=911149 U0542_RS08755 WP_000695065.1 1654770..1655297(-) (pilP) [Acinetobacter baumannii strain Nord12-3]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=911149 U0542_RS08755 WP_000695065.1 1654770..1655297(-) (pilP) [Acinetobacter baumannii strain Nord12-3]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGCAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714