Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   U0542_RS08760 Genome accession   NZ_CP139831
Coordinates   1655308..1656048 (-) Length   246 a.a.
NCBI ID   WP_000076099.1    Uniprot ID   A0A9P2QDS6
Organism   Acinetobacter baumannii strain Nord12-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1650308..1661048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U0542_RS08740 (U0542_08740) aroB 1650850..1651932 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  U0542_RS08745 (U0542_08745) aroK 1651961..1652530 (-) 570 WP_000643712.1 shikimate kinase AroK -
  U0542_RS08750 (U0542_08750) pilQ 1652542..1654707 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  U0542_RS08755 (U0542_08755) pilP 1654770..1655297 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  U0542_RS08760 (U0542_08760) pilO 1655308..1656048 (-) 741 WP_000076099.1 type 4a pilus biogenesis protein PilO Machinery gene
  U0542_RS08765 (U0542_08765) pilN 1656045..1656686 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  U0542_RS08770 (U0542_08770) pilM 1656686..1657744 (-) 1059 WP_004644147.1 pilus assembly protein PilM Machinery gene
  U0542_RS08775 (U0542_08775) ponA 1657906..1660461 (+) 2556 WP_000736667.1 penicillin-binding protein PBP1a -
  U0542_RS08780 (U0542_08780) - 1660479..1660814 (-) 336 Protein_1564 methyltransferase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27801.55 Da        Isoelectric Point: 4.8357

>NTDB_id=911150 U0542_RS08760 WP_000076099.1 1655308..1656048(-) (pilO) [Acinetobacter baumannii strain Nord12-3]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=911150 U0542_RS08760 WP_000076099.1 1655308..1656048(-) (pilO) [Acinetobacter baumannii strain Nord12-3]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.593

100

0.996
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683