Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SOI81_RS01470 Genome accession   NZ_CP139286
Coordinates   312205..314370 (+) Length   721 a.a.
NCBI ID   WP_320541143.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 307205..319370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS01450 (SOI81_01450) pilM 309128..310186 (+) 1059 WP_224992062.1 pilus assembly protein PilM Machinery gene
  SOI81_RS01455 (SOI81_01455) pilN 310186..310827 (+) 642 WP_239975232.1 PilN domain-containing protein Machinery gene
  SOI81_RS01460 (SOI81_01460) pilO 310824..311603 (+) 780 WP_239975231.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI81_RS01465 (SOI81_01465) pilP 311615..312142 (+) 528 WP_239975230.1 pilus assembly protein PilP Machinery gene
  SOI81_RS01470 (SOI81_01470) pilQ 312205..314370 (+) 2166 WP_320541143.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI81_RS01475 (SOI81_01475) aroK 314382..314951 (+) 570 WP_016142884.1 shikimate kinase AroK -
  SOI81_RS01480 (SOI81_01480) aroB 314980..316062 (+) 1083 WP_016142885.1 3-dehydroquinate synthase -
  SOI81_RS01485 (SOI81_01485) - 316079..316963 (+) 885 WP_239975228.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77952.28 Da        Isoelectric Point: 5.9776

>NTDB_id=908742 SOI81_RS01470 WP_320541143.1 312205..314370(+) (pilQ) [Acinetobacter pittii strain AbaK]
MNHVFSQFFMGAVAVAIMQVASAQVSMTNIAPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKAQQNLTQTKV
AIGTNEASSVDVSSDDQRSRLTVNLNEAGAFTTRIEGNTFILKINSAQAVAKPVPTSVVQPQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVTELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYARAQDIMSLVTKGSNNSNGLQSTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNQINTNVLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=908742 SOI81_RS01470 WP_320541143.1 312205..314370(+) (pilQ) [Acinetobacter pittii strain AbaK]
ATGAATCACGTATTCAGTCAGTTTTTTATGGGGGCTGTAGCGGTTGCAATTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACCAACATAGCACCGACGCAAATAGCGGGTCAGGGTACGGAAATTCGAGTGATGTTTAATGGTTTGCCGCCGCAACCAC
AAGCATATCAACTTGAAAATCCTTCACGCTTAATTTTAGATTTTAATAAAGCACAGCAGAATCTTACACAGACAAAAGTA
GCGATTGGAACTAATGAGGCGAGCTCGGTCGATGTAAGCTCTGATGATCAGCGTTCACGTTTAACAGTAAATTTAAATGA
GGCAGGTGCTTTTACTACTCGTATTGAAGGCAATACTTTTATTTTAAAAATTAATTCAGCTCAAGCTGTAGCGAAGCCCG
TACCAACAAGTGTTGTGCAACCCCAAGGTGTTTCAAATATTGGTTTCCAGCGCGGTAGTCAAGGTGAAGGCCTTATTGTT
ATTGACTTGCTGGGAAGTAATACCCCTGTTGATGTTCAACAACAAGGGAGTAAGGTCGTGGTGAGAACGTTAGGCTCTAA
AATTCCTACACACTTAGCTAAACGCTTAAATGTAAATGATTTTGCTACGCCTGTTTCGACAATTGAATCTTATAATGAAA
AAGGCAATGGCGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAATTGACCATT
AGCTTAAAGCGTCCGCAGGACAAAAATGTAACCTCTTTATATAAGACACCTAATTATTCTGGTAATAAGCTTTCTCTCGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAGTTACTGGCTGATTTTACTGGCATTAATATGGTTGCAGCTGACAGCG
TTCAAGGTAATATTACTTTGCGTTTAAAAGATGTTCCGTGGGACCAAGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGAAATGTAATTTGGATTGCTCCAGTTACAGAATTGATTAAGGCTGAAGAAGAAGAGGCAAAAGC
TGTTGCACAGAGTGTGAAATTAGCGCCGTTACAAACTGAGTATATTCAACTGAAATATGCACGAGCTCAAGATATTATGA
GCTTAGTTACCAAAGGCTCAAACAATAGTAATGGTTTGCAGAGTACTTCTGGCGGGGGTACTTCAACCTCAACCAATTTA
AATACTGGTGTTGATAGTTTAGGTAATAATGTAGGAAGTTTATTGAGTCCACGTGGAACAATTACCCAAGATGACCGTAC
CAATACCTTAATTATTAATGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATCTTTTGGATGTACAAGTTA
AACAGGTTATGGTTGAGGCACGTATTGTAAGAGCCTCTACTTCTTTTACTAAAGAACTCGGTGTTAAATGGGGCATATTA
TCGCAAGGGATTACCAATAATAATAATTTGTTAGTAGGTGGCAGTGAAACAACCTTGTGGAATTTACGAGAACCTAAAAA
AGATGAAACCACAGGTGGTTATAAATATACGATTGAACGCCCAGACAATTTAAATGTCGATTTAGGGGTAACTAATCCAG
CTGGAAGTATTGCCTTTGGTTTGATTAGTATGTCGGATTTTATGCTTGATCTCGAACTTTCTGCACTACAAGCTGATGGC
TATGGTGAGGTGATTTCCACCCCTAAAGTGATGACCGCAGATAAACAACCTGCAAAAGTTGCCACAGGTCAACAGGTTCC
ATATCAAACTACGACGAATTCTGCTGCTGGAGCTACAGCAAGTACATCATTTAAAGATGCGCTTTTAAGTTTGGATGTTA
CTCCAAGCATTACGCCTGATGGCAAAATTCAAATGAAATTGGATATTTCAAAGGATTCTGTGGCTGGCGCGGCTCCCAAT
GGCGAGTTAATTTTAAATAAGAATCAGATTAATACTAATGTGCTCGTCAATAATGGTGAGACTGTTATTTTAGGAGGAGT
ATTTGAGCAGACGACTTCTAACTCACAAACCAAGGTTCCTTTCTTTGGAGACATTCCCGTCGTTGGACGTTTATTTAGAA
AAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

AMIN domain (AMIN)

(39-118)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

92.372

100

0.924
  pilQ Acinetobacter baumannii strain A118

92.233

100

0.922
  comQ Acinetobacter baylyi ADP1

74.274

100

0.745
  pilQ Pseudomonas aeruginosa PAK

38.963

100

0.406