Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SOI81_RS01455 Genome accession   NZ_CP139286
Coordinates   310186..310827 (+) Length   213 a.a.
NCBI ID   WP_239975232.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 305186..315827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS01435 (SOI81_01435) - 305187..305519 (+) 333 WP_016142876.1 hypothetical protein -
  SOI81_RS01440 (SOI81_01440) rrmA 305522..306346 (+) 825 WP_320541142.1 putative RNA methyltransferase -
  SOI81_RS01445 (SOI81_01445) ponA 306405..308966 (-) 2562 WP_224992063.1 penicillin-binding protein PBP1a -
  SOI81_RS01450 (SOI81_01450) pilM 309128..310186 (+) 1059 WP_224992062.1 pilus assembly protein PilM Machinery gene
  SOI81_RS01455 (SOI81_01455) pilN 310186..310827 (+) 642 WP_239975232.1 PilN domain-containing protein Machinery gene
  SOI81_RS01460 (SOI81_01460) pilO 310824..311603 (+) 780 WP_239975231.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI81_RS01465 (SOI81_01465) pilP 311615..312142 (+) 528 WP_239975230.1 pilus assembly protein PilP Machinery gene
  SOI81_RS01470 (SOI81_01470) pilQ 312205..314370 (+) 2166 WP_320541143.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI81_RS01475 (SOI81_01475) aroK 314382..314951 (+) 570 WP_016142884.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23991.45 Da        Isoelectric Point: 5.1162

>NTDB_id=908739 SOI81_RS01455 WP_239975232.1 310186..310827(+) (pilN) [Acinetobacter pittii strain AbaK]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFSGWFYLNQKLDDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKAVSSLLPRVEDSYGSFVVTVDLGEMGVTVTDDTANASVSTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908739 SOI81_RS01455 WP_239975232.1 310186..310827(+) (pilN) [Acinetobacter pittii strain AbaK]
ATGGCAACAATTAATTTACTTCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTTCCGGGTGGTTTTATTTGAATCAAAAATTAGATGATCAAGAACAAGCGA
ATCAGCTCATCATCAGTACAAACCAAAATCTAGATCAACAACTTAAAACCTTAAACGGTTTGCAAGAACAACGTGATGCC
ATTATTGAGCGTATGAAACTCATTCAAGGTTTGCAAAGTCAGCGTCCAGTCGTCGTGCGTTTGGTAGATGAATTGGTGCG
CGTGACTCCGGCAGCTATGTATTTGACCAAATTCAGTCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCAGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTCGAAGCATCCCCATGGTATCGCAATGCTTTTATGAATTCTTTCTTGGCG
ACTGAAGAGAAAAAAGATAAGGCTGTGAGTTCTTTGCTTCCCCGAGTGGAAGATAGCTATGGCAGTTTTGTCGTTACTGT
TGATTTAGGGGAAATGGGAGTGACAGTAACAGATGATACTGCCAACGCATCTGTAAGTACGGATAAGGAGGTAGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

73.469

92.019

0.676