Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   SOI81_RS01465 Genome accession   NZ_CP139286
Coordinates   311615..312142 (+) Length   175 a.a.
NCBI ID   WP_239975230.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AbaK     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 306615..317142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI81_RS01450 (SOI81_01450) pilM 309128..310186 (+) 1059 WP_224992062.1 pilus assembly protein PilM Machinery gene
  SOI81_RS01455 (SOI81_01455) pilN 310186..310827 (+) 642 WP_239975232.1 PilN domain-containing protein Machinery gene
  SOI81_RS01460 (SOI81_01460) pilO 310824..311603 (+) 780 WP_239975231.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI81_RS01465 (SOI81_01465) pilP 311615..312142 (+) 528 WP_239975230.1 pilus assembly protein PilP Machinery gene
  SOI81_RS01470 (SOI81_01470) pilQ 312205..314370 (+) 2166 WP_320541143.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI81_RS01475 (SOI81_01475) aroK 314382..314951 (+) 570 WP_016142884.1 shikimate kinase AroK -
  SOI81_RS01480 (SOI81_01480) aroB 314980..316062 (+) 1083 WP_016142885.1 3-dehydroquinate synthase -
  SOI81_RS01485 (SOI81_01485) - 316079..316963 (+) 885 WP_239975228.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19261.40 Da        Isoelectric Point: 9.4082

>NTDB_id=908741 SOI81_RS01465 WP_239975230.1 311615..312142(+) (pilP) [Acinetobacter pittii strain AbaK]
MKLKKILLSLGIGLVLVGCDSRIDAVNQQMADIRNQPPQAIEPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKQ
VYPNFSRAPQPLESYALESLNMKGSMRNNRGQVMALIQTPDHQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=908741 SOI81_RS01465 WP_239975230.1 311615..312142(+) (pilP) [Acinetobacter pittii strain AbaK]
ATGAAACTAAAGAAAATTTTACTTTCTCTGGGGATAGGCTTGGTTTTAGTTGGATGCGACTCAAGAATCGACGCCGTAAA
TCAGCAAATGGCCGATATACGTAATCAGCCACCACAAGCTATAGAACCTGCACCTGTTTTTACACCTGTGCCTCAGTTTA
ATTATGCAGCCCATCAGTTAAAGAGTCCTTTTTTACCAAGCTCACTTGCGGCTGAACTCAAAATTATGGCTGGAAAACAG
GTATATCCGAATTTCTCCCGCGCACCTCAGCCACTCGAAAGCTATGCATTAGAATCCTTAAATATGAAAGGAAGTATGCG
TAACAACCGCGGGCAAGTCATGGCGCTTATTCAAACACCTGACCACCAAATTGAGCGTGTACAGGTGGGGAACTATATCG
GAATGAATCAAGGCCGGATTACCCATATTGGTCCAACTCAGATTGATCTGGTGGAAATTGTTCCTGACGGACGAGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

87.429

100

0.874
  comL Acinetobacter baylyi ADP1

73.373

96.571

0.709