Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SOI80_RS01845 Genome accession   NZ_CP139270
Coordinates   389434..390243 (+) Length   269 a.a.
NCBI ID   WP_017481716.1    Uniprot ID   A0AAN4MGD2
Organism   Acinetobacter pittii strain HCG62     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384434..395243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS01810 (SOI80_01810) - 384992..385147 (-) 156 WP_014207816.1 hypothetical protein -
  SOI80_RS01815 (SOI80_01815) rpoZ 385186..385464 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI80_RS01820 (SOI80_01820) gmk 385537..386166 (-) 630 WP_005804544.1 guanylate kinase -
  SOI80_RS01825 (SOI80_01825) ispH 386289..387239 (+) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI80_RS01830 (SOI80_01830) fimU 387409..387882 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI80_RS01835 (SOI80_01835) pilV 387876..388436 (+) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  SOI80_RS01840 (SOI80_01840) pilW 388436..389437 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  SOI80_RS01845 (SOI80_01845) pilX 389434..390243 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI80_RS01850 (SOI80_01850) pilY1 390255..394109 (+) 3855 WP_320561220.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI80_RS01855 (SOI80_01855) pilY2 394120..394602 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  SOI80_RS01860 (SOI80_01860) pilE 394599..395024 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28558.38 Da        Isoelectric Point: 7.7238

>NTDB_id=908558 SOI80_RS01845 WP_017481716.1 389434..390243(+) (pilX) [Acinetobacter pittii strain HCG62]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTSTNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908558 SOI80_RS01845 WP_017481716.1 389434..390243(+) (pilX) [Acinetobacter pittii strain HCG62]
ATGACCCATTTAATTCATAAGAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGCCAAGTTAGCCAATTAA
ATTTTCAGTCATCTGACACTCCTTTAGAACTCATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAACCCAGGTGCAGAATACAATTTTTGTTATAAGCCTGTTTCTACATCAACAAA
TTTTGCTCAGACTAGAGGCGCAAGTTTACTTCGAGCAGGAAGTGCCAATAATGCGGTTGTCGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACGCAACGTATTCGGGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGCTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.706

100

0.907