Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   SOI80_RS01855 Genome accession   NZ_CP139270
Coordinates   394120..394602 (+) Length   160 a.a.
NCBI ID   WP_002116770.1    Uniprot ID   A0A009RUX0
Organism   Acinetobacter pittii strain HCG62     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389120..399602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS01845 (SOI80_01845) pilX 389434..390243 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI80_RS01850 (SOI80_01850) pilY1 390255..394109 (+) 3855 WP_320561220.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI80_RS01855 (SOI80_01855) pilY2 394120..394602 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  SOI80_RS01860 (SOI80_01860) pilE 394599..395024 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  SOI80_RS01865 (SOI80_01865) rpsP 395172..395423 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI80_RS01870 (SOI80_01870) rimM 395443..395991 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI80_RS01875 (SOI80_01875) trmD 396034..396789 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI80_RS01880 (SOI80_01880) rplS 397009..397377 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI80_RS01885 (SOI80_01885) lip 397430..398371 (-) 942 WP_080612940.1 lipase family alpha/beta hydrolase -
  SOI80_RS01890 (SOI80_01890) - 398487..399518 (-) 1032 WP_017481713.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17520.76 Da        Isoelectric Point: 8.4721

>NTDB_id=908560 SOI80_RS01855 WP_002116770.1 394120..394602(+) (pilY2) [Acinetobacter pittii strain HCG62]
MNKYYIQRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKGEILKLAEQLERHKSKNFTYRGFTTTSVTLP
RGGYTIEISDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGAVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=908560 SOI80_RS01855 WP_002116770.1 394120..394602(+) (pilY2) [Acinetobacter pittii strain HCG62]
ATGAATAAATACTATATCCAACGGTTTAATCAGGGTGTTACCTTGATTGAGCTCATGGTTGTCATCGTGATTGTCGCTAT
TTTTGCTTCGATTGCTATCCCTTCATATCAAAGTTATAGCCGCAGAGCGACTGCCTCTGCTGCTAAAGGTGAAATTCTAA
AATTGGCAGAACAGTTGGAACGGCATAAATCCAAGAACTTTACCTATAGAGGATTTACTACGACATCTGTAACTTTGCCA
CGGGGTGGTTATACGATTGAAATTAGTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAGAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAATTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGCCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAGCAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.75

100

0.938
  comE Acinetobacter baylyi ADP1

40.678

100

0.45