Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SOI80_RS01860 Genome accession   NZ_CP139270
Coordinates   394599..395024 (+) Length   141 a.a.
NCBI ID   WP_002117055.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG62     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 389599..400024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS01850 (SOI80_01850) pilY1 390255..394109 (+) 3855 WP_320561220.1 PilC/PilY family type IV pilus protein Machinery gene
  SOI80_RS01855 (SOI80_01855) pilY2 394120..394602 (+) 483 WP_002116770.1 type IV pilin protein Machinery gene
  SOI80_RS01860 (SOI80_01860) pilE 394599..395024 (+) 426 WP_002117055.1 type IV pilin protein Machinery gene
  SOI80_RS01865 (SOI80_01865) rpsP 395172..395423 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SOI80_RS01870 (SOI80_01870) rimM 395443..395991 (+) 549 WP_002116736.1 ribosome maturation factor RimM -
  SOI80_RS01875 (SOI80_01875) trmD 396034..396789 (+) 756 WP_002116964.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SOI80_RS01880 (SOI80_01880) rplS 397009..397377 (+) 369 WP_002116654.1 50S ribosomal protein L19 -
  SOI80_RS01885 (SOI80_01885) lip 397430..398371 (-) 942 WP_080612940.1 lipase family alpha/beta hydrolase -
  SOI80_RS01890 (SOI80_01890) - 398487..399518 (-) 1032 WP_017481713.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15172.33 Da        Isoelectric Point: 7.1292

>NTDB_id=908561 SOI80_RS01860 WP_002117055.1 394599..395024(+) (pilE) [Acinetobacter pittii strain HCG62]
MKNGFTLIELMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKIVHNRYPSNATITSVYGSSVSPQQG
QALYNLAFASITDSSWVLTATPIATSSQAGDGIICLNDQGQKFWAKGATDCALSATSNWLQ

Nucleotide


Download         Length: 426 bp        

>NTDB_id=908561 SOI80_RS01860 WP_002117055.1 394599..395024(+) (pilE) [Acinetobacter pittii strain HCG62]
ATGAAGAATGGTTTTACTTTAATAGAACTCATGATTGTAGTCGCAATAATTGCAATTTTAGCGGCTATAGCTACACCTTC
GTATTTGCAGTATTTACGCAAAGGACATCGTACAGCTGTTCAATCTGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAATAGTTCACAATCGCTATCCATCGAATGCAACGATTACATCGGTTTATGGTTCTAGTGTCAGTCCTCAACAAGGC
CAAGCCTTATATAACTTAGCTTTCGCTAGCATAACTGATTCAAGTTGGGTGTTAACTGCTACACCTATTGCTACTAGTTC
TCAAGCTGGTGATGGGATCATTTGTCTTAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCAACTGATTGTGCGTTAT
CTGCCACATCAAATTGGCTACAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

85.106

100

0.851
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518