Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   SOI80_RS01840 Genome accession   NZ_CP139270
Coordinates   388436..389437 (+) Length   333 a.a.
NCBI ID   WP_017481717.1    Uniprot ID   A0A9X3QGF6
Organism   Acinetobacter pittii strain HCG62     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383436..394437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS01810 (SOI80_01810) - 384992..385147 (-) 156 WP_014207816.1 hypothetical protein -
  SOI80_RS01815 (SOI80_01815) rpoZ 385186..385464 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI80_RS01820 (SOI80_01820) gmk 385537..386166 (-) 630 WP_005804544.1 guanylate kinase -
  SOI80_RS01825 (SOI80_01825) ispH 386289..387239 (+) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI80_RS01830 (SOI80_01830) fimU 387409..387882 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI80_RS01835 (SOI80_01835) pilV 387876..388436 (+) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  SOI80_RS01840 (SOI80_01840) pilW 388436..389437 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  SOI80_RS01845 (SOI80_01845) pilX 389434..390243 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SOI80_RS01850 (SOI80_01850) pilY1 390255..394109 (+) 3855 WP_320561220.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35814.49 Da        Isoelectric Point: 6.6395

>NTDB_id=908557 SOI80_RS01840 WP_017481717.1 388436..389437(+) (pilW) [Acinetobacter pittii strain HCG62]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTGSTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNTSNAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSTVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=908557 SOI80_RS01840 WP_017481717.1 388436..389437(+) (pilW) [Acinetobacter pittii strain HCG62]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCGACTCAATTATTTATTGGTGGACTTCTATCAAGCCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGGTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACCTATATTGCTGACACATTACTTAGTCGTGGTGCAGGTGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACACTTCAAATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGACTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTACTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACACCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTGCATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

85.285

100

0.853