Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SOI80_RS01830 Genome accession   NZ_CP139270
Coordinates   387409..387882 (+) Length   157 a.a.
NCBI ID   WP_005067119.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HCG62     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 382409..392882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI80_RS01805 (SOI80_01805) spoT 382871..384976 (-) 2106 WP_032006352.1 RelA/SpoT family protein -
  SOI80_RS01810 (SOI80_01810) - 384992..385147 (-) 156 WP_014207816.1 hypothetical protein -
  SOI80_RS01815 (SOI80_01815) rpoZ 385186..385464 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SOI80_RS01820 (SOI80_01820) gmk 385537..386166 (-) 630 WP_005804544.1 guanylate kinase -
  SOI80_RS01825 (SOI80_01825) ispH 386289..387239 (+) 951 WP_032006348.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SOI80_RS01830 (SOI80_01830) fimU 387409..387882 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SOI80_RS01835 (SOI80_01835) pilV 387876..388436 (+) 561 WP_078219781.1 type IV pilus modification protein PilV Machinery gene
  SOI80_RS01840 (SOI80_01840) pilW 388436..389437 (+) 1002 WP_017481717.1 PilW family protein Machinery gene
  SOI80_RS01845 (SOI80_01845) pilX 389434..390243 (+) 810 WP_017481716.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=908555 SOI80_RS01830 WP_005067119.1 387409..387882(+) (fimU) [Acinetobacter pittii strain HCG62]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908555 SOI80_RS01830 WP_005067119.1 387409..387882(+) (fimU) [Acinetobacter pittii strain HCG62]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTAGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAACCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAGCTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCGTTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTGATAACTAATATTACCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885