Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SOI79_RS09305 Genome accession   NZ_CP139266
Coordinates   1943304..1945430 (+) Length   708 a.a.
NCBI ID   WP_068976278.1    Uniprot ID   -
Organism   Acinetobacter pittii strain HUM14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1938304..1950430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS09285 (SOI79_09285) pilM 1940227..1941285 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI79_RS09290 (SOI79_09290) pilN 1941285..1941926 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI79_RS09295 (SOI79_09295) pilO 1941923..1942702 (+) 780 WP_032057248.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI79_RS09300 (SOI79_09300) pilP 1942714..1943241 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  SOI79_RS09305 (SOI79_09305) pilQ 1943304..1945430 (+) 2127 WP_068976278.1 type IV pilus secretin PilQ Machinery gene
  SOI79_RS09310 (SOI79_09310) aroK 1945442..1946011 (+) 570 WP_032004887.1 shikimate kinase AroK -
  SOI79_RS09315 (SOI79_09315) aroB 1946040..1947122 (+) 1083 WP_068976279.1 3-dehydroquinate synthase -
  SOI79_RS09320 (SOI79_09320) - 1947139..1948008 (+) 870 WP_032004886.1 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76712.06 Da        Isoelectric Point: 6.3551

>NTDB_id=908529 SOI79_RS09305 WP_068976278.1 1943304..1945430(+) (pilQ) [Acinetobacter pittii strain HUM14]
MNHVFRQFSMGAVAIAIMQVASAQVSMTNIVPTQIAGQGTEIRVIFNGLPPQPQAYQLENPSRLILDFNKAQQNLTQSKV
AIGTDEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQVVAKPVSANAMQTQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVKTLGSKIPTHLAKRLNVNDFATPVSTIESYNDKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKSVNTSSKPSNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEDDEAKALAQTIKLAPIQTDYIRLNYAKAADVLKLIEETRDGKTAVANRTAGSDSLALES
LLSSRGSAVADTRTNTLIVNDTAQNIDKVRKMIDLIDVQIKQVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVG
GSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQPARVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=908529 SOI79_RS09305 WP_068976278.1 1943304..1945430(+) (pilQ) [Acinetobacter pittii strain HUM14]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGAGCTGTGGCGATTGCAATTATGCAGGTTGCGTCTGCACAGGTCAGCAT
GACTAATATTGTACCGACGCAAATAGCGGGTCAGGGAACAGAAATTCGAGTGATATTTAATGGCTTGCCACCGCAACCAC
AGGCATATCAGCTTGAGAATCCTTCACGTTTGATTCTAGACTTTAATAAAGCGCAGCAGAATTTAACACAGTCAAAAGTG
GCGATTGGAACGGATGAAGCGAGTTCGGTCGATGTAAGCTCCGATGATCAGCGTTCACGTTTAACTGTAAATTTGAAAGA
GGCAGGTGCTTTTACAACTCGTATTGAAGGCAACACTTTTATTTTAAAGATTAATTCTGCGCAAGTTGTAGCTAAACCTG
TATCAGCAAATGCAATGCAAACCCAAGGTGTTTCAAACATCGGCTTCCAACGCGGTAGTCAAGGGGAAGGTCTTATTGTT
ATTGACCTGTTGGGGAGTAATACGCCTGTTGATGTGCAACAACAAGGCAGCAAAGTTGTAGTAAAAACTTTGGGTTCTAA
AATTCCTACTCATTTAGCTAAGCGCTTAAATGTAAATGATTTTGCAACGCCTGTTTCGACCATTGAATCTTATAATGATA
AAGGCAACGGTGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCGGAAAATAAATTAACCATC
AGTCTCAAGCGTCCTCAAGATAAAAGTGTAAACACTTCATCTAAACCATCTAATTATTCTGGTAATAAGCTTTCTCTCGA
TTTTCAAGATATTGAAGTTCGTCGCGTTTTACAATTACTTGCTGATTTTACTGGCATTAATATGGTTGCGGCTGACAGTG
TGCAAGGTAACATCACTTTGCGTTTAAAAGATGTTCCATGGGATCAGGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGTAATGTAATTTGGATTGCTCCAGTTGCGGAACTGATCAAGGCAGAAGACGATGAGGCAAAAGC
TTTAGCACAAACTATTAAATTAGCACCAATCCAAACAGATTATATTCGTTTGAATTATGCAAAAGCAGCAGATGTGCTTA
AACTAATTGAAGAGACTCGTGATGGCAAGACAGCTGTCGCAAATCGTACAGCAGGTTCAGACTCTCTTGCTTTAGAAAGC
TTATTAAGCTCAAGAGGTAGTGCTGTTGCCGATACGCGTACTAATACTTTGATTGTAAATGATACAGCCCAAAATATTGA
TAAAGTTCGTAAAATGATTGATTTGATTGATGTACAGATCAAACAAGTCATGGTGGAAGCTCGAATTGTAAGAGCCTCTA
CTTCTTTTACTAAAGAGCTCGGTGTTAAATGGGGAATATTATCGCAAGGGATTACCAACAATAATAATTTATTAGTTGGT
GGTAGCGAAACGACCTTATGGAATTTACGAGAGCCCAAAAAGGATGAGACTACGGGTGGTTATAAATACACGATTGAACG
TCCAGATAACTTAAATGTCGATTTAGGTGTAACCAATCCGGCTGGAAGTATTGCCTTTGGCTTGATTAGTATGTCTGATT
TTATGCTTGATCTCGAACTTTCTGCATTACAAGCTGACGGTTATGGTGAGGTGATTTCTACACCTAAAGTGATGACTGCA
GACAAACAACCTGCGAGAGTGGCAACAGGTCAACAAGTTCCTTATCAAACCACGACGAATTCTGCTGCAGGTGCCACAGC
AAGTACATCATTTAAAGATGCACTATTAAGCCTGGATGTTACCCCGAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TGGATATTTCTAAGGATTCTGTAGCTGGCGAAGCGCCTAATGGTGAATTAATTTTAAATAAAAATAATATTAATACCAAT
GTACTCGTTAATAATGGTGAGACAGTCATTTTAGGAGGGGTGTTTGAGCAGACTACTTCTAATTCACAAACCAAGGTTCC
TTTCTTTGGAGACATTCCTGTTGTTGGACGTTTATTTAGAAAAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTT
TCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(39-118)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Bacterial type II and III secretion system protein (Secretin)

(542-700)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

84.743

100

0.863
  pilQ Acinetobacter baumannii strain A118

84.605

100

0.862
  comQ Acinetobacter baylyi ADP1

73.287

100

0.74
  pilQ Pseudomonas aeruginosa PAK

39.518

99.718

0.394