Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SOI79_RS09290 Genome accession   NZ_CP139266
Coordinates   1941285..1941926 (+) Length   213 a.a.
NCBI ID   WP_002116944.1    Uniprot ID   A0A009RUZ9
Organism   Acinetobacter pittii strain HUM14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1936285..1946926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI79_RS09270 (SOI79_09270) - 1936290..1936622 (+) 333 WP_002116981.1 hypothetical protein -
  SOI79_RS09275 (SOI79_09275) rrmA 1936625..1937449 (+) 825 WP_081305942.1 putative RNA methyltransferase -
  SOI79_RS09280 (SOI79_09280) ponA 1937504..1940065 (-) 2562 WP_068976277.1 penicillin-binding protein PBP1a -
  SOI79_RS09285 (SOI79_09285) pilM 1940227..1941285 (+) 1059 WP_005067078.1 pilus assembly protein PilM Machinery gene
  SOI79_RS09290 (SOI79_09290) pilN 1941285..1941926 (+) 642 WP_002116944.1 PilN domain-containing protein Machinery gene
  SOI79_RS09295 (SOI79_09295) pilO 1941923..1942702 (+) 780 WP_032057248.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI79_RS09300 (SOI79_09300) pilP 1942714..1943241 (+) 528 WP_005067086.1 pilus assembly protein PilP Machinery gene
  SOI79_RS09305 (SOI79_09305) pilQ 1943304..1945430 (+) 2127 WP_068976278.1 type IV pilus secretin PilQ Machinery gene
  SOI79_RS09310 (SOI79_09310) aroK 1945442..1946011 (+) 570 WP_032004887.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23921.36 Da        Isoelectric Point: 5.4186

>NTDB_id=908526 SOI79_RS09290 WP_002116944.1 1941285..1941926(+) (pilN) [Acinetobacter pittii strain HUM14]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLNDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMSSFLA
TEEKKDKAISSLLPRVEDSYGSFVVTVDVGEMGVTTTDDTANTSVGTDKEAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908526 SOI79_RS09290 WP_002116944.1 1941285..1941926(+) (pilN) [Acinetobacter pittii strain HUM14]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGTAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAAATGATCAAGAACAAGCAA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAATGGCTTGCAAGAACAGCGGGATGCA
ATTATTGAGCGTATGAAGCTCATTCAAGGTTTGCAAAGCCAGCGTCCGGTCGTTGTACGTTTGGTGGATGAATTAGTACG
TGTGACCCCGGCAGCCATGTATTTGACTAAATTCAGTCGAACCGGAGATAAATTTACGATTGAAGGTAAAGCGGAAAGTC
CAAATACGGTTGCAGAATTATTACGTAATCTCGAAGCATCGCCATGGTATCGCAACGCTTTTATGAGTTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGGCTATCAGTTCTTTGCTTCCTAGAGTTGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATGTAGGGGAAATGGGTGTGACTACAACAGATGATACCGCCAATACGTCTGTAGGTACGGATAAGGAGGCGGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009RUZ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

71.569

95.775

0.685