Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   SOI76_RS01625 Genome accession   NZ_CP139249
Coordinates   349091..351256 (+) Length   721 a.a.
NCBI ID   WP_104079736.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344091..356256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS01605 (SOI76_01605) pilM 346013..347071 (+) 1059 WP_205668420.1 pilus assembly protein PilM Machinery gene
  SOI76_RS01610 (SOI76_01610) pilN 347071..347712 (+) 642 WP_104079733.1 PilN domain-containing protein Machinery gene
  SOI76_RS01615 (SOI76_01615) pilO 347709..348488 (+) 780 WP_104079734.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI76_RS01620 (SOI76_01620) pilP 348500..349027 (+) 528 WP_104079735.1 pilus assembly protein PilP Machinery gene
  SOI76_RS01625 (SOI76_01625) pilQ 349091..351256 (+) 2166 WP_104079736.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI76_RS01630 (SOI76_01630) aroK 351268..351837 (+) 570 WP_016142884.1 shikimate kinase AroK -
  SOI76_RS01635 (SOI76_01635) aroB 351866..352948 (+) 1083 WP_104079737.1 3-dehydroquinate synthase -
  SOI76_RS01640 (SOI76_01640) - 352965..353849 (+) 885 WP_104079738.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77920.24 Da        Isoelectric Point: 5.9776

>NTDB_id=908281 SOI76_RS01625 WP_104079736.1 349091..351256(+) (pilQ) [Acinetobacter pittii strain MCR8900]
MNHVFSQFSMGAVAVAIMQVASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKAQQNLTQSKV
AIGTNEASSVDVSSDDQRSRLTVNLNEAGAFTTRIEGNTFILKINSAQAIAKPVPTSVVQPQGVSNIGFQRGSQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITIQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVTELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYARAQDIMSLVTKGSNNSNGLQSTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLREPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNQINTNVLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVVGRLFRKDVKSDDKQELLIFVTPRIVNDTLVRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=908281 SOI76_RS01625 WP_104079736.1 349091..351256(+) (pilQ) [Acinetobacter pittii strain MCR8900]
ATGAATCACGTATTCAGTCAGTTTTCTATGGGGGCTGTAGCGGTTGCAATTATGCAGGTTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCGACGCAAATAGCGGGTCAGGGTACGGAAATTCGAGTGATGTTTAATGGTTTGCCACCGCAACCAC
AAGCATATCAACTTGAAAATCCTTCACGTTTGATTTTAGATTTTAATAAAGCGCAGCAGAATCTCACGCAGTCAAAAGTA
GCGATTGGAACCAATGAAGCGAGCTCGGTCGATGTAAGCTCTGATGATCAGCGTTCACGTTTAACAGTAAATTTAAATGA
GGCAGGCGCTTTTACAACTCGTATTGAAGGCAATACTTTTATTTTAAAAATTAATTCAGCTCAAGCTATAGCGAAGCCCG
TACCAACAAGCGTCGTGCAACCCCAAGGTGTTTCAAATATTGGTTTCCAGCGCGGTAGTCAAGGTGAAGGCCTTATTGTT
ATTGACTTGCTGGGAAGTAACACCCCTGTTGATGTCCAGCAACAAGGGAGCAAGGTCGTGGTGAGAACGTTAGGTTCTAA
AATTCCTACACACTTAGCTAAACGCTTAAATGTAAATGATTTTGCTACGCCTGTTTCGACAATTGAATCTTATAACGAAA
AAGGCAATGGCGTTATTACGATTCAATCTACTGGTAGCTATGAATATATGGCTTATCAGGCAGAAAATAAATTGACCATT
AGCTTAAAGCGTCCGCAGGACAAAAATGTAACCTCTTTATATAAGACACCTAACTACTCTGGTAATAAGCTTTCTCTCGA
TTTCCAAGATATTGAAGTTCGTCGCGTTTTACAGTTACTTGCTGATTTTACTGGTATTAATATGGTTGCGGCTGATAGCG
TTCAAGGTAATATTACTTTGCGTTTAAAAGATGTTCCGTGGGATCAAGCACTTGATATTATTTTAAAAACTAAAAATTTA
GATAAACGCAGAAATGGAAATGTAATTTGGATTGCTCCAGTTACAGAATTGATTAAGGCCGAAGAAGAAGAGGCAAAAGC
TGTTGCACAGAGTGTAAAATTAGCGCCATTACAAACTGAGTATATTCAACTGAAATATGCACGAGCTCAAGATATTATGA
GCTTAGTTACCAAAGGCTCAAACAATAGTAATGGTTTGCAGAGTACGTCTGGCGGGGGTACTTCAACCTCAACCAATTTA
AATACTGGTGTTGATAGTTTAGGTAATAATGTAGGGAGTTTATTGAGTCCACGTGGAACAATTACTCAAGATGACCGTAC
CAATACCTTAATTATTAATGATACGGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATCTTTTGGATGTACAAGTTA
AACAGGTTATGGTTGAGGCGCGTATTGTAAGAGCTTCTACTTCTTTTACTAAAGAACTCGGTGTTAAATGGGGCATATTA
TCGCAAGGGATTACCAATAATAATAATTTGTTAGTGGGTGGTAGTGAAACAACCTTGTGGAATTTAAGAGAACCTAAAAA
AGATGAAACAACAGGCGGTTATAAATATACGATTGAACGCCCAGATAATTTAAATGTCGATTTAGGGGTCACTAACCCAG
CTGGAAGTATTGCCTTTGGTTTGATTAGTATGTCGGATTTTATGCTTGATCTCGAACTTTCTGCACTTCAAGCTGATGGC
TATGGTGAGGTGATTTCCACTCCTAAAGTGATGACTGCAGATAAACAACCTGCAAAAGTTGCAACAGGTCAACAGGTCCC
ATATCAAACCACGACGAATTCTGCTGCCGGAGCTACAGCAAGTACATCATTTAAAGATGCGCTTTTAAGTTTGGATGTTA
CTCCGAGCATCACGCCTGATGGCAAAATTCAAATGAAATTGGATATTTCAAAGGATTCTGTTGCTGGCGCGGCCCCTAAT
GGCGAGTTAATTTTAAATAAGAATCAAATTAATACCAATGTACTCGTCAATAATGGTGAGACTGTTATTTTAGGAGGAGT
ATTTGAGCAGACGACTTCTAACTCACAAACCAAGGTTCCTTTCTTTGGAGACATTCCTGTCGTTGGACGTTTATTTAGAA
AAGATGTGAAATCTGATGATAAGCAAGAGTTACTGATTTTCGTTACGCCACGAATTGTTAATGACACTTTGGTGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

AMIN domain (AMIN)

(39-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

92.788

100

0.928
  pilQ Acinetobacter baumannii strain A118

92.649

100

0.926
  comQ Acinetobacter baylyi ADP1

74.689

100

0.749
  pilQ Pseudomonas aeruginosa PAK

38.963

100

0.406