Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   SOI76_RS01615 Genome accession   NZ_CP139249
Coordinates   347709..348488 (+) Length   259 a.a.
NCBI ID   WP_104079734.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342709..353488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS01600 (SOI76_01600) ponA 343290..345851 (-) 2562 WP_146065068.1 penicillin-binding protein PBP1a -
  SOI76_RS01605 (SOI76_01605) pilM 346013..347071 (+) 1059 WP_205668420.1 pilus assembly protein PilM Machinery gene
  SOI76_RS01610 (SOI76_01610) pilN 347071..347712 (+) 642 WP_104079733.1 PilN domain-containing protein Machinery gene
  SOI76_RS01615 (SOI76_01615) pilO 347709..348488 (+) 780 WP_104079734.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI76_RS01620 (SOI76_01620) pilP 348500..349027 (+) 528 WP_104079735.1 pilus assembly protein PilP Machinery gene
  SOI76_RS01625 (SOI76_01625) pilQ 349091..351256 (+) 2166 WP_104079736.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI76_RS01630 (SOI76_01630) aroK 351268..351837 (+) 570 WP_016142884.1 shikimate kinase AroK -
  SOI76_RS01635 (SOI76_01635) aroB 351866..352948 (+) 1083 WP_104079737.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29478.61 Da        Isoelectric Point: 5.4225

>NTDB_id=908279 SOI76_RS01615 WP_104079734.1 347709..348488(+) (pilO) [Acinetobacter pittii strain MCR8900]
MSPDELHELSLEQAPSKKKKITLEKFLQQFNTLDMNSYGSWPLSVKITCWIFIFFAVLALGYFVAIQPKLEAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQLQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
ITIEATGDYHAFGAFVSSIAALPRIVTMHDFVVEAAPVKDSKSDIPVLNYAIKAKTYRYMGVVENQNNSDPQVINGESQI
NASDSRNVHIPSIKKSKRK

Nucleotide


Download         Length: 780 bp        

>NTDB_id=908279 SOI76_RS01615 WP_104079734.1 347709..348488(+) (pilO) [Acinetobacter pittii strain MCR8900]
ATGAGTCCTGATGAACTTCATGAGCTGTCTTTAGAACAAGCTCCATCTAAGAAAAAAAAGATCACCTTAGAAAAATTTCT
TCAGCAATTTAACACGCTAGATATGAACAGTTATGGCAGCTGGCCATTATCTGTGAAAATTACGTGCTGGATTTTTATTT
TCTTTGCTGTATTGGCCTTGGGATATTTTGTTGCTATTCAACCAAAGCTCGAAGCAATTGATAATGCTCAGGCACAAGAA
AGTAACTTATTAAATGAGTTTCGGGAAAAAGACTCAAAATTACGTAACTTGCAGCAATACCAGCTTCAACTTCAAGAGAT
GCAAGCCAATTTTAATCAGCAGTTAGAACAATTGCCAAAAGAAACTGAAATTCCAAGTTTAGTTGAAGATATTAACTTAA
CGGGGGTGAATTCTGGTCTGAAGTTTAAAAATATCCGCTTAGAAGATGAAGTGAAGCAGGAAATTTTTATTGAACAGCCA
ATTACGATTGAGGCAACAGGCGATTATCACGCTTTTGGTGCTTTTGTTAGCAGCATTGCGGCATTACCGCGTATTGTGAC
GATGCATGATTTTGTAGTTGAAGCTGCTCCTGTTAAAGATAGTAAATCAGATATTCCCGTGCTTAATTACGCTATTAAAG
CAAAAACTTATCGCTATATGGGCGTGGTTGAAAACCAAAATAATAGTGATCCTCAAGTGATAAATGGTGAAAGTCAGATA
AACGCCTCCGATAGCCGTAATGTACATATTCCTTCTATAAAGAAGTCAAAGCGAAAGTAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

88.393

86.486

0.764
  comO Acinetobacter baylyi ADP1

72.961

89.961

0.656