Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   SOI76_RS01610 Genome accession   NZ_CP139249
Coordinates   347071..347712 (+) Length   213 a.a.
NCBI ID   WP_104079733.1    Uniprot ID   -
Organism   Acinetobacter pittii strain MCR8900     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342071..352712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOI76_RS01590 (SOI76_01590) - 342077..342409 (+) 333 WP_104079730.1 hypothetical protein -
  SOI76_RS01595 (SOI76_01595) rrmA 342412..343236 (+) 825 WP_104079731.1 putative RNA methyltransferase -
  SOI76_RS01600 (SOI76_01600) ponA 343290..345851 (-) 2562 WP_146065068.1 penicillin-binding protein PBP1a -
  SOI76_RS01605 (SOI76_01605) pilM 346013..347071 (+) 1059 WP_205668420.1 pilus assembly protein PilM Machinery gene
  SOI76_RS01610 (SOI76_01610) pilN 347071..347712 (+) 642 WP_104079733.1 PilN domain-containing protein Machinery gene
  SOI76_RS01615 (SOI76_01615) pilO 347709..348488 (+) 780 WP_104079734.1 type 4a pilus biogenesis protein PilO Machinery gene
  SOI76_RS01620 (SOI76_01620) pilP 348500..349027 (+) 528 WP_104079735.1 pilus assembly protein PilP Machinery gene
  SOI76_RS01625 (SOI76_01625) pilQ 349091..351256 (+) 2166 WP_104079736.1 type IV pilus secretin PilQ family protein Machinery gene
  SOI76_RS01630 (SOI76_01630) aroK 351268..351837 (+) 570 WP_016142884.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23979.45 Da        Isoelectric Point: 5.1162

>NTDB_id=908278 SOI76_RS01610 WP_104079733.1 347071..347712(+) (pilN) [Acinetobacter pittii strain MCR8900]
MATINLLPWRDGLREQRKKQFIILCFGVVVLGITTVFAGWFYLNQKLDDQEQANQLIISTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKAMSSLLPRVEDSYGSFVVTVDLGEMGVTATDDTANASVSTDKEVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=908278 SOI76_RS01610 WP_104079733.1 347071..347712(+) (pilN) [Acinetobacter pittii strain MCR8900]
ATGGCAACAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAGCAGCGAAAAAAACAATTTATTATTTTATGTTTTGG
GGTCGTTGTTTTGGGGATAACCACTGTATTTGCAGGGTGGTTTTATTTGAATCAAAAATTAGATGATCAAGAACAAGCGA
ATCAGCTCATCATCAGTACAAACCAGAATCTAGATCAACAACTTAAAACCTTAAACGGTTTGCAAGAACAGCGCGATGCC
ATTATTGAGCGTATGAAACTCATTCAGGGTTTGCAAAGTCAGCGTCCAGTTGTCGTGCGCTTGGTGGATGAATTGGTGCG
CGTGACTCCGGCAGCCATGTATTTGACTAAATTCAGCCGAACTGGAGATAAATTTACCATTGAAGGTAAAGCAGAAAGTC
CAAATACAGTTGCAGAGTTATTACGTAATCTTGAAGCATCTCCATGGTATCGCAATGCTTTTATGAATTCTTTCTTGGCG
ACTGAAGAGAAAAAAGATAAAGCAATGAGTTCTTTGCTTCCGCGAGTGGAAGATAGCTATGGCAGTTTTGTTGTTACTGT
TGATTTAGGGGAAATGGGAGTGACAGCAACAGATGATACCGCCAATGCGTCTGTAAGTACGGATAAGGAGGTAGCAAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

89.202

100

0.892
  comN Acinetobacter baylyi ADP1

73.5

93.897

0.69