Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SJN48_RS01685 Genome accession   NZ_CP139212
Coordinates   355191..356000 (+) Length   269 a.a.
NCBI ID   WP_046811883.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350191..361000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS01650 (SJN48_01655) - 350749..350904 (-) 156 Protein_316 hypothetical protein -
  SJN48_RS01655 (SJN48_01660) rpoZ 350943..351221 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SJN48_RS01660 (SJN48_01665) gmk 351294..351923 (-) 630 WP_005804544.1 guanylate kinase -
  SJN48_RS01665 (SJN48_01670) ispH 352046..352996 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SJN48_RS01670 (SJN48_01675) fimU 353166..353639 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SJN48_RS01675 (SJN48_01680) pilV 353633..354193 (+) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  SJN48_RS01680 (SJN48_01685) pilW 354193..355194 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  SJN48_RS01685 (SJN48_01690) pilX 355191..356000 (+) 810 WP_046811883.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SJN48_RS01690 (SJN48_01695) pilY1 356012..359866 (+) 3855 WP_407324050.1 PilC/PilY family type IV pilus protein Machinery gene
  SJN48_RS01695 (SJN48_01700) pilY2 359877..360359 (+) 483 WP_130121773.1 type IV pilin protein Machinery gene
  SJN48_RS01700 (SJN48_01705) pilE 360356..360781 (+) 426 WP_014207809.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28542.38 Da        Isoelectric Point: 7.7238

>NTDB_id=908101 SJN48_RS01685 WP_046811883.1 355191..356000(+) (pilX) [Acinetobacter pittii strain WWTP]
MTHLIHKSRSKEKGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTATNFAQTRGASLLRAGSANNAVVEDGGVAGFCNLTTDYGSNRQAVVTQVAVSVPTD
AANDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQRDCLSTSAAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=908101 SJN48_RS01685 WP_046811883.1 355191..356000(+) (pilX) [Acinetobacter pittii strain WWTP]
ATGACCCATTTAATTCATAAAAGTAGATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGATTGT
TATTTCTGTAGGCGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACCAATAGTCAAGTGAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTTATTGTGCAGATGAATCCTACCACCCTAACTAATATTACTAATGTGATT
GGTGCCGCGCTTAAAGAGCATGAAAGTAATCCTGGTGCGGAATACAACTTTTGTTATAAGCCTGTTTCTACAGCAACAAA
TTTTGCTCAGACCAGAGGTGCAAGTTTACTTCGAGCAGGAAGTGCTAATAATGCGGTTGTTGAAGATGGCGGAGTGGCGG
GTTTCTGCAATTTAACAACTGACTATGGAAGTAATCGTCAAGCAGTGGTTACCCAAGTTGCTGTAAGTGTTCCAACAGAT
GCTGCTAACGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCGGAAGGTACGCAACTACCTAAAAGCATGTT
GTCTACACAACGTATTCGAGTGATTACAACTGCTTTTTTGCCAGCCTATGCATCTACCTCTATTGAAACTTTACAAAGAG
ATTGTTTAAGCACGAGTGCAGCAAAAATTAGCGACAATTTTGATACCGCATTAACGGCTAAACAAACATTGGCGGAGTGT
TTGGCAAATCATAACGTGCCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAACTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

89.338

100

0.903