Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   SJN48_RS01680 Genome accession   NZ_CP139212
Coordinates   354193..355194 (+) Length   333 a.a.
NCBI ID   WP_005804547.1    Uniprot ID   A0A009NFM5
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 349193..360194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS01650 (SJN48_01655) - 350749..350904 (-) 156 Protein_316 hypothetical protein -
  SJN48_RS01655 (SJN48_01660) rpoZ 350943..351221 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SJN48_RS01660 (SJN48_01665) gmk 351294..351923 (-) 630 WP_005804544.1 guanylate kinase -
  SJN48_RS01665 (SJN48_01670) ispH 352046..352996 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SJN48_RS01670 (SJN48_01675) fimU 353166..353639 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SJN48_RS01675 (SJN48_01680) pilV 353633..354193 (+) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  SJN48_RS01680 (SJN48_01685) pilW 354193..355194 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  SJN48_RS01685 (SJN48_01690) pilX 355191..356000 (+) 810 WP_046811883.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SJN48_RS01690 (SJN48_01695) pilY1 356012..359866 (+) 3855 WP_407324050.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35785.45 Da        Isoelectric Point: 6.3332

>NTDB_id=908100 SJN48_RS01680 WP_005804547.1 354193..355194(+) (pilW) [Acinetobacter pittii strain WWTP]
MAHSFVLWKQRGFTLIELMVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYIARDIRLLNYGNVTNPIL
TDTTPWGGVVLTASTATNNNNVNFVPNVGTNTYIADTLLSRGAGDTVSTVSNHWKGLSNIQNSSDAAVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVERYFLRLDSNGSSQQDYALACDANTPSAVATAQPTTVAGLGDAGQIVLPRIDHFHVLFGAKN
AAGNFAYYTIPQYRAAAQAARDATPSVMPPRILSIQISVLARSTNNAQSKAIDPEQSFFMLDQTVHASDNTTRFLRRTYN
LTIALRNAMGESL

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=908100 SJN48_RS01680 WP_005804547.1 354193..355194(+) (pilW) [Acinetobacter pittii strain WWTP]
ATGGCTCACTCATTTGTATTATGGAAACAACGAGGCTTTACATTAATTGAGCTGATGGTTGCATTGGCTTTAGGTCTAAT
TTTAGTAGCCGCGGCAACTCAATTATTTATTGGTGGACTTCTATCAAGTCGTCTACAAAAAGCAAATGCTGAAATACAAG
ATAGCGGTATTTTTGGCTTGGAATATATTGCCCGTGATATACGCCTTCTAAATTATGGAAATGTAACCAACCCAATATTA
ACTGATACGACCCCTTGGGGCGGTGTTGTATTAACTGCTTCAACTGCAACCAATAACAACAATGTTAATTTTGTCCCTAA
CGTTGGAACAAATACTTATATTGCTGACACATTACTTAGTCGTGGTGCAGGGGATACGGTGAGTACTGTGAGTAATCACT
GGAAAGGTCTTTCAAATATACAGAACAGTTCAGATGCTGCTGTGCAAAGTGATCAGCTGACTATCCAATTTATTGCACCT
ACGAATATGACCAATTGTGAAGGTGTAAATGTACTTGCAGGTGATTTAATTGTAGAGCGTTATTTTTTACGTCTGGATAG
CAATGGTAGTTCCCAGCAAGATTATGCACTTGCATGTGATGCAAATACTCCCTCTGCTGTAGCCACAGCTCAACCGACCA
CTGTTGCTGGGTTAGGCGACGCTGGTCAAATTGTATTGCCGCGTATTGATCATTTCCATGTGCTGTTTGGTGCAAAAAAT
GCGGCTGGCAATTTTGCTTATTATACCATTCCCCAATATCGCGCTGCTGCACAGGCTGCCCGAGATGCCACGCCATCTGT
GATGCCGCCACGAATTCTTTCAATACAAATATCTGTATTAGCGCGCTCTACTAATAATGCCCAAAGCAAAGCAATAGATC
CTGAGCAATCTTTTTTTATGTTAGATCAAACCGTACATGCTTCTGATAATACAACTCGATTCTTACGCCGCACTTATAAC
TTAACAATTGCTCTACGCAACGCGATGGGGGAAAGTCTATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009NFM5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

84.985

100

0.85