Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SJN48_RS01670 Genome accession   NZ_CP139212
Coordinates   353166..353639 (+) Length   157 a.a.
NCBI ID   WP_005067119.1    Uniprot ID   -
Organism   Acinetobacter pittii strain WWTP     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 348166..358639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SJN48_RS01645 (SJN48_01650) spoT 348628..350733 (-) 2106 WP_002116807.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  SJN48_RS01650 (SJN48_01655) - 350749..350904 (-) 156 Protein_316 hypothetical protein -
  SJN48_RS01655 (SJN48_01660) rpoZ 350943..351221 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  SJN48_RS01660 (SJN48_01665) gmk 351294..351923 (-) 630 WP_005804544.1 guanylate kinase -
  SJN48_RS01665 (SJN48_01670) ispH 352046..352996 (+) 951 WP_002116992.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SJN48_RS01670 (SJN48_01675) fimU 353166..353639 (+) 474 WP_005067119.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SJN48_RS01675 (SJN48_01680) pilV 353633..354193 (+) 561 WP_078210318.1 type IV pilus modification protein PilV Machinery gene
  SJN48_RS01680 (SJN48_01685) pilW 354193..355194 (+) 1002 WP_005804547.1 PilW family protein Machinery gene
  SJN48_RS01685 (SJN48_01690) pilX 355191..356000 (+) 810 WP_046811883.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16912.60 Da        Isoelectric Point: 7.7942

>NTDB_id=908098 SJN48_RS01670 WP_005067119.1 353166..353639(+) (fimU) [Acinetobacter pittii strain WWTP]
MRGIIPQDGFTLVELMVTIAVMAIIAMMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTALNTPT
SLNWKADSNNSLELKNIAADGTQSSLTATTLTFNANGVITNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=908098 SJN48_RS01670 WP_005067119.1 353166..353639(+) (fimU) [Acinetobacter pittii strain WWTP]
ATGAGGGGAATTATTCCGCAAGACGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCGGTCATGGCTATTATCGCGAT
GATGGCTGCACCATCTATGTCGAATTTATTAGAAAGCAAACGACTAGATGGAAATCAACGAGATCTAATCAATACTTTAT
CGGAAGCAAAGAGCCAAGCCATACTTGGTCGACAAGACGTTTCTATTAATCTGAATTCAACAGCTTTAAATACTCCCACT
TCCTTGAATTGGAAAGCTGATTCCAATAACAGTCTTGAACTTAAAAATATCGCTGCTGATGGTACGCAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGGGTAATAACCAATATCACCCAAGACACACTTTTATCTATCTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885