Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   SLQ83_RS01555 Genome accession   NZ_CP139208
Coordinates   333527..334345 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain HNNY86G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 328527..339345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS01520 (SLQ83_01520) - 329109..329239 (-) 131 Protein_289 hypothetical protein -
  SLQ83_RS01525 (SLQ83_01525) rpoZ 329278..329556 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  SLQ83_RS01530 (SLQ83_01530) gmk 329629..330258 (-) 630 WP_000015937.1 guanylate kinase -
  SLQ83_RS01535 (SLQ83_01535) ispH 330381..331331 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SLQ83_RS01540 (SLQ83_01540) fimU 331501..331974 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SLQ83_RS01545 (SLQ83_01545) pilV 331968..332528 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  SLQ83_RS01550 (SLQ83_01550) pilW 332529..333530 (+) 1002 WP_000079195.1 PilW family protein Machinery gene
  SLQ83_RS01555 (SLQ83_01555) pilX 333527..334345 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SLQ83_RS01560 (SLQ83_01560) pilY1 334357..338211 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  SLQ83_RS01565 (SLQ83_01565) pilY2 338224..338706 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  SLQ83_RS01570 (SLQ83_01570) pilE 338703..339128 (+) 426 WP_000788343.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=907950 SLQ83_RS01555 WP_000149377.1 333527..334345(+) (pilX) [Acinetobacter baumannii strain HNNY86G]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=907950 SLQ83_RS01555 WP_000149377.1 333527..334345(+) (pilX) [Acinetobacter baumannii strain HNNY86G]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGAAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989