Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   SLQ83_RS01545 Genome accession   NZ_CP139208
Coordinates   331968..332528 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNNY86G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326968..337528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS01520 (SLQ83_01520) - 329109..329239 (-) 131 Protein_289 hypothetical protein -
  SLQ83_RS01525 (SLQ83_01525) rpoZ 329278..329556 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  SLQ83_RS01530 (SLQ83_01530) gmk 329629..330258 (-) 630 WP_000015937.1 guanylate kinase -
  SLQ83_RS01535 (SLQ83_01535) ispH 330381..331331 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SLQ83_RS01540 (SLQ83_01540) fimU 331501..331974 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SLQ83_RS01545 (SLQ83_01545) pilV 331968..332528 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  SLQ83_RS01550 (SLQ83_01550) pilW 332529..333530 (+) 1002 WP_000079195.1 PilW family protein Machinery gene
  SLQ83_RS01555 (SLQ83_01555) pilX 333527..334345 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=907948 SLQ83_RS01545 WP_002194578.1 331968..332528(+) (pilV) [Acinetobacter baumannii strain HNNY86G]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=907948 SLQ83_RS01545 WP_002194578.1 331968..332528(+) (pilV) [Acinetobacter baumannii strain HNNY86G]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCTTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414