Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   SLQ83_RS01550 Genome accession   NZ_CP139208
Coordinates   332529..333530 (+) Length   333 a.a.
NCBI ID   WP_000079195.1    Uniprot ID   D0CCR0
Organism   Acinetobacter baumannii strain HNNY86G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 327529..338530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS01520 (SLQ83_01520) - 329109..329239 (-) 131 Protein_289 hypothetical protein -
  SLQ83_RS01525 (SLQ83_01525) rpoZ 329278..329556 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  SLQ83_RS01530 (SLQ83_01530) gmk 329629..330258 (-) 630 WP_000015937.1 guanylate kinase -
  SLQ83_RS01535 (SLQ83_01535) ispH 330381..331331 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SLQ83_RS01540 (SLQ83_01540) fimU 331501..331974 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SLQ83_RS01545 (SLQ83_01545) pilV 331968..332528 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  SLQ83_RS01550 (SLQ83_01550) pilW 332529..333530 (+) 1002 WP_000079195.1 PilW family protein Machinery gene
  SLQ83_RS01555 (SLQ83_01555) pilX 333527..334345 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  SLQ83_RS01560 (SLQ83_01560) pilY1 334357..338211 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35863.60 Da        Isoelectric Point: 6.1010

>NTDB_id=907949 SLQ83_RS01550 WP_000079195.1 332529..333530(+) (pilW) [Acinetobacter baumannii strain HNNY86G]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNHWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPAVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQFFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=907949 SLQ83_RS01550 WP_000079195.1 332529..333530(+) (pilW) [Acinetobacter baumannii strain HNNY86G]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCCAGCCGATTGCAAAAGGCCAATGCTGAAATTCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACCACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTAACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGTTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGCGGTTAGTGCTACAGCTCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGGCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTTTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0CCR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.7

100

0.997