Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   SLQ83_RS01540 Genome accession   NZ_CP139208
Coordinates   331501..331974 (+) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain HNNY86G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326501..336974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS01515 (SLQ83_01515) - 326964..329069 (-) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  SLQ83_RS01520 (SLQ83_01520) - 329109..329239 (-) 131 Protein_289 hypothetical protein -
  SLQ83_RS01525 (SLQ83_01525) rpoZ 329278..329556 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  SLQ83_RS01530 (SLQ83_01530) gmk 329629..330258 (-) 630 WP_000015937.1 guanylate kinase -
  SLQ83_RS01535 (SLQ83_01535) ispH 330381..331331 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  SLQ83_RS01540 (SLQ83_01540) fimU 331501..331974 (+) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  SLQ83_RS01545 (SLQ83_01545) pilV 331968..332528 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  SLQ83_RS01550 (SLQ83_01550) pilW 332529..333530 (+) 1002 WP_000079195.1 PilW family protein Machinery gene
  SLQ83_RS01555 (SLQ83_01555) pilX 333527..334345 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=907947 SLQ83_RS01540 WP_001214059.1 331501..331974(+) (fimU) [Acinetobacter baumannii strain HNNY86G]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=907947 SLQ83_RS01540 WP_001214059.1 331501..331974(+) (fimU) [Acinetobacter baumannii strain HNNY86G]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994