Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   SLQ83_RS01570 Genome accession   NZ_CP139208
Coordinates   338703..339128 (+) Length   141 a.a.
NCBI ID   WP_000788343.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain HNNY86G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 333703..344128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS01560 (SLQ83_01560) pilY1 334357..338211 (+) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  SLQ83_RS01565 (SLQ83_01565) pilY2 338224..338706 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  SLQ83_RS01570 (SLQ83_01570) pilE 338703..339128 (+) 426 WP_000788343.1 type IV pilin protein Machinery gene
  SLQ83_RS01575 (SLQ83_01575) rpsP 339275..339526 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  SLQ83_RS01580 (SLQ83_01580) rimM 339546..340094 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  SLQ83_RS01585 (SLQ83_01585) trmD 340140..340880 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  SLQ83_RS01590 (SLQ83_01590) rplS 341089..341457 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  SLQ83_RS01595 (SLQ83_01595) - 341510..342451 (-) 942 WP_085916958.1 triacylglycerol lipase -
  SLQ83_RS01600 (SLQ83_01600) - 342566..343597 (-) 1032 WP_001189454.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15244.43 Da        Isoelectric Point: 7.1297

>NTDB_id=907953 SLQ83_RS01570 WP_000788343.1 338703..339128(+) (pilE) [Acinetobacter baumannii strain HNNY86G]
MKNGFTLIEIMIVVAIIAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESEKVVHNRYPSNATIQSIYGSNVSPLQG
KALYTLAFTTLNDSTWVLTATPIANTSQAGDGIICLNDQGQKFWAKGATDCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=907953 SLQ83_RS01570 WP_000788343.1 338703..339128(+) (pilE) [Acinetobacter baumannii strain HNNY86G]
ATGAAGAATGGTTTTACTTTAATAGAAATCATGATTGTAGTAGCGATAATTGCAATTTTAGCAGCTATAGCGACACCTTC
ATATTTGCAATATTTACGTAAAGGGCATCGTACAGCTGTTCAATCCGAAATGATGAATATTGCCCAAACATTAGAATCAG
AAAAAGTAGTTCACAATCGTTATCCGTCGAATGCGACCATACAGTCGATTTATGGTTCTAATGTGAGTCCTCTTCAGGGC
AAAGCTTTATATACTTTAGCTTTTACTACTTTAAACGATTCGACATGGGTGCTTACGGCAACACCAATCGCTAATACTTC
ACAAGCTGGTGATGGAATTATTTGCTTAAATGATCAAGGGCAAAAATTTTGGGCAAAAGGTGCTACAGATTGTGCACTAT
CGGCTTCATCAAGTTGGACAGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

97.872

100

0.979
  comF Acinetobacter baylyi ADP1

52.143

99.291

0.518