Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ABN568_RS15175 Genome accession   NZ_CP158275
Coordinates   3088783..3089412 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain EC2257     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3083783..3094412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABN568_RS15160 (ABN568_15145) helD 3084025..3086079 (-) 2055 WP_020232990.1 DNA helicase IV -
  ABN568_RS15165 (ABN568_15150) yccF 3086202..3086648 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ABN568_RS15170 (ABN568_15155) yccS 3086658..3088820 (+) 2163 WP_000875041.1 YccS family putative transporter -
  ABN568_RS15175 (ABN568_15160) sxy/tfoX 3088783..3089412 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ABN568_RS15180 (ABN568_15165) sulA 3089631..3090140 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ABN568_RS15185 (ABN568_15170) ompA 3090497..3091549 (+) 1053 WP_000750418.1 porin OmpA -
  ABN568_RS15190 (ABN568_15175) matP 3091624..3092076 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ABN568_RS15195 (ABN568_15180) ycbZ 3092262..3094022 (+) 1761 WP_029701764.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=907952 ABN568_RS15175 WP_000839153.1 3088783..3089412(-) (sxy/tfoX) [Escherichia coli strain EC2257]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=907952 ABN568_RS15175 WP_000839153.1 3088783..3089412(-) (sxy/tfoX) [Escherichia coli strain EC2257]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1