Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   SLQ83_RS01485 Genome accession   NZ_CP139208
Coordinates   321775..322203 (+) Length   142 a.a.
NCBI ID   WP_000993713.1    Uniprot ID   A0A6F8TC45
Organism   Acinetobacter baumannii strain HNNY86G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316775..327203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLQ83_RS01465 (SLQ83_01465) - 318163..319050 (+) 888 WP_001017317.1 metal-dependent hydrolase -
  SLQ83_RS01470 (SLQ83_01470) - 319181..319771 (+) 591 WP_000846931.1 LemA family protein -
  SLQ83_RS01475 (SLQ83_01475) - 319796..320878 (+) 1083 WP_001246543.1 YgcG family protein -
  SLQ83_RS01480 (SLQ83_01480) - 320872..321432 (+) 561 WP_000258949.1 TPM domain-containing protein -
  SLQ83_RS01485 (SLQ83_01485) pilA 321775..322203 (+) 429 WP_000993713.1 pilin Machinery gene
  SLQ83_RS01490 (SLQ83_01490) - 322259..323569 (+) 1311 WP_106438584.1 O-antigen ligase -
  SLQ83_RS01495 (SLQ83_01495) - 323676..325304 (+) 1629 WP_001195770.1 PglL family O-oligosaccharyltransferase -
  SLQ83_RS01500 (SLQ83_01500) bfr 325347..325811 (-) 465 WP_000678123.1 bacterioferritin -
  SLQ83_RS01505 (SLQ83_01505) - 326056..326250 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  SLQ83_RS01510 (SLQ83_01510) - 326460..326843 (-) 384 WP_000090000.1 RidA family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 14515.55 Da        Isoelectric Point: 6.1941

>NTDB_id=907946 SLQ83_RS01485 WP_000993713.1 321775..322203(+) (pilA) [Acinetobacter baumannii strain HNNY86G]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQNYIAKSQASEAFTLADGLKTTINTNLQAGTCFAGGATAATAADQVAGKY
GDAEIGGTAPNCTITYTFKSSGVSTKLTSKQIVMNVSETGILTKNSSTNAPAELLPQSFTAS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=907946 SLQ83_RS01485 WP_000993713.1 321775..322203(+) (pilA) [Acinetobacter baumannii strain HNNY86G]
ATGAATGCACAAAAAGGTTTTACATTAATCGAACTTATGATCGTGGTTGCCATTATCGGTATTTTGGCGGCAATTGCGAT
TCCTGCGTATCAAAACTATATTGCTAAGTCACAAGCATCTGAGGCATTTACTCTAGCAGATGGATTGAAAACAACAATTA
ATACTAATTTACAGGCTGGGACATGTTTTGCTGGCGGCGCTACTGCAGCAACGGCCGCTGATCAAGTAGCTGGAAAATAT
GGTGATGCTGAGATTGGCGGAACTGCACCAAATTGTACGATCACCTATACATTCAAATCATCGGGTGTATCAACTAAACT
TACTTCTAAACAGATTGTAATGAATGTAAGCGAAACAGGTATTTTAACAAAGAATAGCAGTACTAATGCTCCAGCTGAGT
TACTTCCACAATCTTTTACAGCTTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin (bacterial filament) (Pilin)

(35-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6F8TC45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter nosocomialis M2

92.254

100

0.923
  pilA Acinetobacter baumannii strain A118

44.828

100

0.458
  pilA Pseudomonas aeruginosa PAK

41.497

100

0.43
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

40.411

100

0.415
  pilA Vibrio cholerae strain A1552

40.411

100

0.415
  pilA Vibrio cholerae C6706

40.411

100

0.415