Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   SKB18_RS04735 Genome accession   NZ_CP139163
Coordinates   992002..992436 (-) Length   144 a.a.
NCBI ID   WP_011922561.1    Uniprot ID   -
Organism   Streptococcus suis strain cnzyss2-311     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 987002..997436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS04710 - 987189..988445 (-) 1257 WP_011921729.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  SKB18_RS04715 - 988501..989052 (-) 552 WP_012774908.1 folate family ECF transporter S component -
  SKB18_RS04720 - 989367..990554 (-) 1188 WP_012775422.1 acetate kinase -
  SKB18_RS04725 comYH 990604..991557 (-) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  SKB18_RS04730 comGG 991614..992024 (-) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  SKB18_RS04735 comGF/cglF 992002..992436 (-) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  SKB18_RS04740 comYE 992423..992716 (-) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  SKB18_RS04745 comGD 992688..993095 (-) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  SKB18_RS04750 comYC 993076..993357 (-) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  SKB18_RS04755 comYB 993359..994396 (-) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  SKB18_RS04760 comYA 994308..995258 (-) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  SKB18_RS04765 - 995344..996287 (+) 944 Protein_927 S66 peptidase family protein -
  SKB18_RS04770 - 996322..996687 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16491.85 Da        Isoelectric Point: 5.9234

>NTDB_id=907446 SKB18_RS04735 WP_011922561.1 992002..992436(-) (comGF/cglF) [Streptococcus suis strain cnzyss2-311]
MLKSKIPAFTLLECLVVLVILSGSLLIFEGLSKLLVQEAHYQGQTVQKEWLVFSSQLRSEWDQAELVKVENGKVYVNKGE
QALAFGKSWSDDFRKTNDRGQGYQPMLYQVDSAAISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=907446 SKB18_RS04735 WP_011922561.1 992002..992436(-) (comGF/cglF) [Streptococcus suis strain cnzyss2-311]
TTGTTAAAAAGTAAAATTCCTGCTTTTACACTCTTGGAATGTTTGGTGGTTCTAGTCATTCTGTCAGGTAGCCTCTTGAT
TTTTGAAGGCTTATCCAAATTACTAGTCCAGGAAGCGCATTATCAAGGTCAGACCGTTCAAAAGGAATGGTTGGTCTTCT
CTAGCCAATTGCGGTCGGAGTGGGACCAGGCTGAATTGGTCAAGGTTGAAAATGGCAAGGTCTATGTCAACAAAGGTGAA
CAGGCTTTGGCCTTTGGCAAGTCATGGTCGGATGATTTTCGGAAAACAAATGATAGAGGCCAGGGTTACCAACCCATGCT
CTATCAGGTGGATAGCGCAGCCATTTCCCAAGAAAACCAGCTGGTGCGCATCGACTTTAGCTTTAAAAACGGAGAGGAGC
GAACCTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(37-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus pneumoniae TIGR4

52.482

97.917

0.514
  comGF/cglF Streptococcus pneumoniae Rx1

52.482

97.917

0.514
  comGF/cglF Streptococcus pneumoniae D39

52.482

97.917

0.514
  comGF/cglF Streptococcus pneumoniae R6

52.482

97.917

0.514
  comGF/cglF Streptococcus mitis NCTC 12261

52.985

93.056

0.493
  comYF Streptococcus mutans UA140

48.611

100

0.486
  comYF Streptococcus mutans UA159

47.917

100

0.479
  comGF/cglF Streptococcus mitis SK321

50

93.056

0.465
  comGF Lactococcus lactis subsp. cremoris KW2

45.39

97.917

0.444