Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   SKB18_RS04755 Genome accession   NZ_CP139163
Coordinates   993359..994396 (-) Length   345 a.a.
NCBI ID   WP_011921719.1    Uniprot ID   -
Organism   Streptococcus suis strain cnzyss2-311     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 988359..999396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SKB18_RS04715 - 988501..989052 (-) 552 WP_012774908.1 folate family ECF transporter S component -
  SKB18_RS04720 - 989367..990554 (-) 1188 WP_012775422.1 acetate kinase -
  SKB18_RS04725 comYH 990604..991557 (-) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  SKB18_RS04730 comGG 991614..992024 (-) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG -
  SKB18_RS04735 comGF/cglF 992002..992436 (-) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  SKB18_RS04740 comYE 992423..992716 (-) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  SKB18_RS04745 comGD 992688..993095 (-) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD -
  SKB18_RS04750 comYC 993076..993357 (-) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  SKB18_RS04755 comYB 993359..994396 (-) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  SKB18_RS04760 comYA 994308..995258 (-) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  SKB18_RS04765 - 995344..996287 (+) 944 Protein_927 S66 peptidase family protein -
  SKB18_RS04770 - 996322..996687 (-) 366 WP_002936568.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 38954.94 Da        Isoelectric Point: 9.3127

>NTDB_id=907449 SKB18_RS04755 WP_011921719.1 993359..994396(-) (comYB) [Streptococcus suis strain cnzyss2-311]
MRKLIGFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLIHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLSGLSLVAVLAGMVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=907449 SKB18_RS04755 WP_011921719.1 993359..994396(-) (comYB) [Streptococcus suis strain cnzyss2-311]
ATGCGCAAATTGATCGGCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTACCCTTGGCTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCCAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGTTGCTGGCAGGCAAACCCTTTTCGAGTTTGCTG
GCAGATTTGCGATTTTCAGATGCGGTGGTCACACAGGTGGCTCTAGCAGAAGTTCATGGTAATACCAGCCTGAGTTTGAT
TCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCGATTATATTGC
TTGGTTTTCTGCTTTTGATTATGCTTGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACAGTG
CTGATTAATCATCTACCGACCATCTTTTTATCTCTAAGTGGACTTAGTTTGGTGGCGGTCTTAGCTGGTATGGTTTGGTT
TCGCAAAACCAATAAAATTAAGGTCTTTTCCTGCTTGGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGCTTGATGCAAGAG
CAGCAGTCGCAGCTTTTTCGGGAGATTGGCCAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGTTTTCACGAACACAT
TAAGACCTACGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTACGGTCAGGTCAAGTCCAAGTTGGGTAGCGAGT
TGACAGTTTATGCGGCTGAATGTTGGGAGGATTTTTTCTCTCGGGTCAATAGAGCCATGCAGCTAATCCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTCATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.743

99.13

0.632
  comGB/cglB Streptococcus mitis NCTC 12261

60.896

97.101

0.591
  comYB Streptococcus mutans UA140

59.531

98.841

0.588
  comYB Streptococcus mutans UA159

59.531

98.841

0.588
  comGB/cglB Streptococcus mitis SK321

60.597

97.101

0.588
  comGB/cglB Streptococcus pneumoniae Rx1

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae D39

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae R6

60.299

97.101

0.586
  comGB/cglB Streptococcus pneumoniae TIGR4

60.299

97.101

0.586
  comGB Lactococcus lactis subsp. cremoris KW2

50.445

97.681

0.493