Detailed information NTG0907448

Bioinformatically predicted

Overview

• Name: comYC
• Type: Machinery gene
• Locus tag: SKB18_RS04750
• Genome accession: NZ_CP139163
• Coordinates: 993076..993357 (-)
• Length: 93 a.a.
• NCBI ID: WP_011921720.1
• Uniprot ID: A0A0M9FL05
• Organism: Streptococcus suis strain cnzyss2-311
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 988076..998357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SKB18_RS04715	-	988501..989052 (-)	552	WP_012774908.1	folate family ECF transporter S component	-
SKB18_RS04720	-	989367..990554 (-)	1188	WP_012775422.1	acetate kinase	-
SKB18_RS04725	comYH	990604..991557 (-)	954	WP_011922562.1	class I SAM-dependent methyltransferase	Machinery gene
SKB18_RS04730	comGG	991614..992024 (-)	411	WP_011921724.1	competence type IV pilus minor pilin ComGG	-
SKB18_RS04735	comGF/cglF	992002..992436 (-)	435	WP_011922561.1	competence type IV pilus minor pilin ComGF	Machinery gene
SKB18_RS04740	comYE	992423..992716 (-)	294	WP_011921722.1	competence type IV pilus minor pilin ComGE	Machinery gene
SKB18_RS04745	comGD	992688..993095 (-)	408	WP_011921721.1	competence type IV pilus minor pilin ComGD	-
SKB18_RS04750	comYC	993076..993357 (-)	282	WP_011921720.1	competence type IV pilus major pilin ComGC	Machinery gene
SKB18_RS04755	comYB	993359..994396 (-)	1038	WP_011921719.1	competence type IV pilus assembly protein ComGB	Machinery gene
SKB18_RS04760	comYA	994308..995258 (-)	951	WP_011921718.1	competence type IV pilus ATPase ComGA	Machinery gene
SKB18_RS04765	-	995344..996287 (+)	944	Protein_927	S66 peptidase family protein	-
SKB18_RS04770	-	996322..996687 (-)	366	WP_002936568.1	DUF1033 family protein	-

Sequence

Protein

• Length: 93 a.a.
• Molecular weight: 10408.34 Da
• Isoelectric Point: 7.0117

>NTDB_id=907448 SKB18_RS04750 WP_011921720.1 993076..993357(-) (comYC) [Streptococcus suis strain cnzyss2-311]
MKKLVEMKVKGFTLVEMLVVLGIISLLLLLFVPNLSQQKDAIQKKGDAAVVKVVESQMELYELEHDEEATVADLQAKGYI
TEKQAKQYATAKK

Nucleotide

• Length: 282 bp

>NTDB_id=907448 SKB18_RS04750 WP_011921720.1 993076..993357(-) (comYC) [Streptococcus suis strain cnzyss2-311]
ATGAAAAAATTAGTTGAAATGAAGGTAAAAGGGTTCACTCTGGTGGAAATGTTGGTCGTTTTAGGGATCATTAGCCTGCT
CTTGCTCCTCTTTGTGCCAAATTTGAGCCAGCAGAAGGATGCTATTCAGAAGAAGGGGGATGCGGCTGTTGTCAAAGTAG
TGGAGAGTCAGATGGAGCTCTATGAATTGGAACATGACGAGGAAGCAACGGTGGCAGATTTGCAGGCGAAAGGTTATATT
ACTGAAAAACAAGCAAAACAGTATGCTACGGCGAAAAAATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (8-30)

3D structure

• AlphaFold DB: A0A0M9FL05

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYC	Streptococcus suis isolate S10	100	100	1
comGC/cglC	Streptococcus mitis SK321	68.235	91.398	0.624
comGC/cglC	Streptococcus mitis NCTC 12261	68.235	91.398	0.624
comGC/cglC	Streptococcus pneumoniae D39	70.37	87.097	0.613
comGC/cglC	Streptococcus pneumoniae R6	70.37	87.097	0.613
comGC/cglC	Streptococcus pneumoniae TIGR4	70.37	87.097	0.613
comGC/cglC	Streptococcus pneumoniae Rx1	70.37	87.097	0.613
comYC	Streptococcus gordonii str. Challis substr. CH1	61.798	95.699	0.591
comYC	Streptococcus mutans UA140	60.227	94.624	0.57
comYC	Streptococcus mutans UA159	60.227	94.624	0.57
comGC	Lactococcus lactis subsp. cremoris KW2	56.818	94.624	0.538
comGC	Staphylococcus aureus N315	50	83.871	0.419
comGC	Staphylococcus aureus MW2	50	83.871	0.419
comGC	Bacillus subtilis subsp. subtilis str. 168	49.333	80.645	0.398
comGC	Latilactobacillus sakei subsp. sakei 23K	43.75	86.022	0.376