NTDB

Overview

Name	ssbA	Type	Machinery gene
Locus tag	RQP18_RS13270	Genome accession	NZ_CP138333
Coordinates	2606966..2607469 (-)	Length	167 a.a.
NCBI ID	WP_342388139.1	Uniprot ID	-
Organism	Salinicoccus sp. Bachu38
Function	ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2601966..2612469

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RQP18_RS13240 (RQP18_13180)	-	2602171..2602791 (+)	621	WP_342388134.1	helix-turn-helix transcriptional regulator	-
RQP18_RS13245 (RQP18_13185)	-	2602828..2604048 (+)	1221	WP_342388135.1	site-specific integrase	-
RQP18_RS13250 (RQP18_13190)	-	2604048..2604782 (+)	735	WP_342388136.1	hypothetical protein	-
RQP18_RS13255 (RQP18_13195)	rpsR	2604888..2605127 (-)	240	WP_031546752.1	30S ribosomal protein S18	-
RQP18_RS13260 (RQP18_13200)	modB	2605322..2606008 (-)	687	WP_342388137.1	molybdate ABC transporter permease subunit	-
RQP18_RS13265 (RQP18_13205)	modA	2605989..2606756 (-)	768	WP_342388138.1	molybdate ABC transporter substrate-binding protein	-
RQP18_RS13270 (RQP18_13210)	ssbA	2606966..2607469 (-)	504	WP_342388139.1	single-stranded DNA-binding protein	Machinery gene
RQP18_RS13275 (RQP18_13215)	rpsF	2607494..2607790 (-)	297	WP_342388140.1	30S ribosomal protein S6	-
RQP18_RS13280 (RQP18_13220)	ychF	2607907..2609007 (-)	1101	WP_342388141.1	redox-regulated ATPase YchF	-
RQP18_RS13285 (RQP18_13225)	-	2609020..2609214 (-)	195	WP_031546760.1	DUF951 domain-containing protein	-
RQP18_RS13290 (RQP18_13230)	-	2609189..2610160 (-)	972	WP_373446089.1	mechanosensitive ion channel family protein	-
RQP18_RS13295 (RQP18_13235)	-	2610169..2611020 (-)	852	WP_342388143.1	ParB/RepB/Spo0J family partition protein	-
RQP18_RS13300 (RQP18_13240)	-	2611130..2611942 (-)	813	WP_342388144.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

Download Length: 167 a.a. Molecular weight: 18336.13 Da Isoelectric Point: 5.2850

                                >NTDB_id=901845 RQP18_RS13270 WP_342388139.1 2606966..2607469(-) (ssbA) [Salinicoccus sp. Bachu38]

MLNRVVLVGRLTKDPELKVSQSNISVATFTLAVNRPFTSANGERGADFINCVVFRKQAENVNQYLKKGSLAGVDGRLQSR

SYENKEGQRVYVTEVVCDSVQFLEPKGQGQGSNQQQNNSADSYQNAYGNQSTGSRPAPQKSRQDSKEENPFANADGPVDI

SDDDLPF

Nucleotide

Download Length: 504 bp

                                >NTDB_id=901845 RQP18_RS13270 WP_342388139.1 2606966..2607469(-) (ssbA) [Salinicoccus sp. Bachu38]

ATGCTGAACCGTGTTGTATTGGTAGGGCGTCTTACAAAAGACCCCGAACTGAAAGTCAGTCAAAGTAATATATCTGTAGC

GACCTTCACTCTGGCAGTCAACCGTCCGTTCACAAGTGCGAACGGCGAACGTGGGGCTGACTTCATCAACTGTGTCGTTT

TCCGCAAACAGGCAGAGAACGTCAATCAGTACTTGAAGAAGGGCAGTCTGGCGGGAGTCGATGGCAGACTGCAGAGTCGT

TCCTATGAGAACAAAGAAGGTCAAAGGGTATATGTGACTGAAGTAGTGTGTGATAGTGTGCAGTTCCTGGAACCTAAAGG

ACAAGGGCAAGGCAGTAATCAACAGCAAAATAACTCAGCAGATAGCTATCAGAATGCGTACGGTAACCAGTCCACTGGTT

CAAGACCCGCACCTCAGAAATCCAGACAGGATTCAAAAGAGGAAAACCCATTCGCCAATGCAGATGGGCCGGTCGACATC

AGTGATGACGATCTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.386	100	0.605
ssb	Latilactobacillus sakei subsp. sakei 23K	53.714	100	0.563
ssb	Glaesserella parasuis strain SC1401	33.514	100	0.371
ssbB	Bacillus subtilis subsp. subtilis str. 168	58.491	63.473	0.371
ssb	Neisseria meningitidis MC58	33.702	100	0.365
ssb	Neisseria gonorrhoeae MS11	33.702	100	0.365

Detailed information NTG0901845