Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   SC043_RS07000 Genome accession   NZ_CP138309
Coordinates   1397923..1398327 (+) Length   134 a.a.
NCBI ID   WP_003130657.1    Uniprot ID   -
Organism   Lactococcus lactis strain B26     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1392923..1403327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SC043_RS06975 (SC043_06975) - 1393112..1393864 (-) 753 WP_010905753.1 bifunctional metallophosphatase/5'-nucleotidase -
  SC043_RS06980 (SC043_06980) - 1393974..1394993 (-) 1020 WP_003130663.1 DUF475 domain-containing protein -
  SC043_RS06985 (SC043_06985) - 1395041..1395538 (-) 498 WP_003130662.1 VanZ family protein -
  SC043_RS06990 (SC043_06990) - 1395672..1396301 (-) 630 WP_021214545.1 YigZ family protein -
  SC043_RS06995 (SC043_06995) comFA 1396358..1397680 (+) 1323 WP_021214546.1 DEAD/DEAH box helicase Machinery gene
  SC043_RS07000 (SC043_07000) comFC 1397923..1398327 (+) 405 WP_003130657.1 ComF family protein Machinery gene
  SC043_RS07005 (SC043_07005) - 1398361..1398939 (-) 579 WP_003130655.1 nucleotidyltransferase family protein -
  SC043_RS07010 (SC043_07010) - 1398953..1399408 (-) 456 WP_003130653.1 diacylglycerol kinase family protein -
  SC043_RS07015 (SC043_07015) ybeY 1399392..1399880 (-) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  SC043_RS07020 (SC043_07020) - 1400032..1400511 (-) 480 WP_003130650.1 NUDIX hydrolase -
  SC043_RS07025 (SC043_07025) - 1400569..1401537 (-) 969 WP_023349142.1 PhoH family protein -
  SC043_RS07030 (SC043_07030) - 1401639..1402827 (-) 1189 Protein_1370 Nramp family divalent metal transporter -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15735.15 Da        Isoelectric Point: 9.8798

>NTDB_id=901710 SC043_RS07000 WP_003130657.1 1397923..1398327(+) (comFC) [Lactococcus lactis strain B26]
MKDYFSQYKFVGDYRLYQIFEPYFKNISQKSPLVPIPISPKRLEERGFNQVTAFLQQDNFIELLEKENSVKQSSLNRKER
LESPNPFRLKKGLKVPTKVILIDDIYTTGTTLYHASQILKEAGVHEIRSFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=901710 SC043_RS07000 WP_003130657.1 1397923..1398327(+) (comFC) [Lactococcus lactis strain B26]
ATGAAAGATTATTTTAGCCAGTATAAATTTGTTGGAGATTATCGATTATACCAAATTTTTGAGCCCTATTTTAAAAATAT
TTCCCAAAAATCTCCTTTGGTTCCAATTCCTATTTCACCAAAAAGATTAGAGGAACGTGGTTTCAATCAAGTGACTGCTT
TTCTTCAACAAGATAATTTTATTGAACTTCTTGAAAAAGAGAATTCGGTCAAACAATCTAGCCTTAATCGAAAAGAACGA
TTGGAAAGTCCAAATCCTTTTCGATTAAAAAAAGGGCTAAAAGTCCCTACAAAAGTTATATTAATTGACGATATTTATAC
AACAGGTACCACCTTATATCACGCATCACAAATTCTAAAAGAAGCTGGTGTTCATGAAATAAGGAGCTTTTCTCTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(91-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

67.91

100

0.679
  comFC/cflB Streptococcus mitis NCTC 12261

46.043

100

0.478
  comFC/cflB Streptococcus mitis SK321

46.043

100

0.478
  comFC/cflB Streptococcus pneumoniae Rx1

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae D39

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae R6

43.885

100

0.455
  comFC/cflB Streptococcus pneumoniae TIGR4

43.885

100

0.455
  comFC Bacillus subtilis subsp. subtilis str. 168

38.194

100

0.41
  comFC Latilactobacillus sakei subsp. sakei 23K

39.231

97.015

0.381