Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   R6Y88_RS13440 Genome accession   NZ_CP137687
Coordinates   2646316..2646657 (+) Length   113 a.a.
NCBI ID   WP_015384858.1    Uniprot ID   -
Organism   Bacillus subtilis strain YT-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2641316..2651657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R6Y88_RS13425 - 2644508..2645146 (+) 639 WP_015483797.1 class A sortase -
  R6Y88_RS13430 ywpF 2645271..2645681 (-) 411 WP_015384859.1 YwpF-like family protein -
  R6Y88_RS13435 ywpG 2645856..2646239 (+) 384 WP_003227796.1 DynA interaction protein YwpG -
  R6Y88_RS13440 ssbB 2646316..2646657 (+) 342 WP_015384858.1 single-stranded DNA-binding protein SsbB Machinery gene
  R6Y88_RS13445 glcR 2646882..2647658 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  R6Y88_RS13450 ywpJ 2647664..2648521 (+) 858 WP_015384856.1 phosphatase YwpJ -
  R6Y88_RS13455 hepAB 2648647..2651415 (-) 2769 WP_015384855.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12476.14 Da        Isoelectric Point: 7.8150

>NTDB_id=899738 R6Y88_RS13440 WP_015384858.1 2646316..2646657(+) (ssbB) [Bacillus subtilis strain YT-4]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLIGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=899738 R6Y88_RS13440 WP_015384858.1 2646316..2646657(+) (ssbB) [Bacillus subtilis strain YT-4]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCATCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

98.23

100

0.982
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

45.283

93.805

0.425
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

42.857

92.92

0.398