Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   R2B70_RS03845 Genome accession   NZ_CP137630
Coordinates   798662..798982 (-) Length   106 a.a.
NCBI ID   WP_042076786.1    Uniprot ID   -
Organism   Aeromonas sp. XH     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 793662..803982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R2B70_RS03825 (R2B70_03825) - 794078..794746 (-) 669 WP_219144301.1 DnaT-like ssDNA-binding domain-containing protein -
  R2B70_RS03830 (R2B70_03830) - 795004..795975 (+) 972 WP_042076792.1 response regulator -
  R2B70_RS03835 (R2B70_03835) - 796048..797442 (-) 1395 WP_209795105.1 peptide MFS transporter -
  R2B70_RS03840 (R2B70_03840) galU 797656..798567 (-) 912 WP_209795104.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  R2B70_RS03845 (R2B70_03845) comEA 798662..798982 (-) 321 WP_042076786.1 ComEA family DNA-binding protein Machinery gene
  R2B70_RS03850 (R2B70_03850) cysQ 799148..799918 (+) 771 WP_209795103.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  R2B70_RS03855 (R2B70_03855) - 799987..800283 (-) 297 WP_318162679.1 YciI family protein -
  R2B70_RS03860 (R2B70_03860) - 800308..800871 (-) 564 WP_318162680.1 septation protein A -
  R2B70_RS03865 (R2B70_03865) - 800962..802467 (-) 1506 WP_318162681.1 aminotransferase class V-fold PLP-dependent enzyme -
  R2B70_RS03870 (R2B70_03870) trhA 802662..803294 (+) 633 WP_318162682.1 PAQR family membrane homeostasis protein TrhA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 10970.74 Da        Isoelectric Point: 8.0460

>NTDB_id=899521 R2B70_RS03845 WP_042076786.1 798662..798982(-) (comEA) [Aeromonas sp. XH]
MNHKALVAALLLGCLPLLTQPVLAADKPATKPAATVATTTEAGKINLNTASADELASLKGIGEKKAQAIVDHREKQGKFT
SVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=899521 R2B70_RS03845 WP_042076786.1 798662..798982(-) (comEA) [Aeromonas sp. XH]
ATGAACCACAAAGCTCTCGTCGCCGCCCTGTTGCTGGGCTGCCTCCCTCTGCTGACTCAGCCCGTACTGGCCGCCGACAA
GCCGGCCACCAAGCCTGCCGCGACCGTCGCGACCACCACTGAGGCCGGCAAGATCAACCTCAATACCGCCAGCGCCGATG
AACTCGCGTCCCTGAAGGGCATCGGCGAGAAGAAGGCACAGGCCATCGTCGACCATCGCGAGAAACAGGGCAAGTTCACC
TCGGTGGATCAGCTGGCGGACGTGAGCGGCATAGGGCCCGCCACCCTGGAGGCGAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

50

100

0.519
  comEA Vibrio cholerae C6706

50

100

0.519
  comEA/comE1 Glaesserella parasuis strain SC1401

47.664

100

0.481
  comE1/comEA Haemophilus influenzae Rd KW20

44.144

100

0.462
  comEA Vibrio parahaemolyticus RIMD 2210633

45.361

91.509

0.415
  comEA Legionella pneumophila strain ERS1305867

41.584

95.283

0.396
  comEA Legionella pneumophila str. Paris

41.584

95.283

0.396