Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   R5H38_RS10245 Genome accession   NZ_CP137602
Coordinates   1983394..1984575 (+) Length   393 a.a.
NCBI ID   WP_277837634.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1978394..1989575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS10215 - 1979024..1981603 (+) 2580 WP_318150666.1 YfhO family protein -
  R5H38_RS10235 - 1982032..1982715 (-) 684 WP_412080661.1 YoaK family protein -
  R5H38_RS10240 rlmH 1982722..1983201 (-) 480 WP_289647063.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R5H38_RS10245 htrA 1983394..1984575 (+) 1182 WP_277837634.1 S1C family serine protease Regulator
  R5H38_RS10250 spo0J 1984638..1985396 (+) 759 WP_289647064.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 41158.92 Da        Isoelectric Point: 4.2375

>NTDB_id=899267 R5H38_RS10245 WP_277837634.1 1983394..1984575(+) (htrA) [Streptococcus parasuis strain 221006]
MKKLLKFVILFVVGFLGGIGGYYFASSTLTQGNSTSNQANTTSVSNVQYSNDTSTTQAVEKVQDAVVSVINYQTQSSNSV
SSIFGNIESSDELAVAGEGSGVIYKKDGDTAYIVTNNHVISGAEKIDILLASGEKLSGELVGADTYSDIAVIKIAADKVT
TIAEFANSDTIKVGETAIAIGSPLGSVYANTVTQGIISSLSRTVTSQTEDGQTISTNAIQTDAAINPGNSGGPLINIQGQ
VIGINSSKITSSSVSSSGVAIEGMGFAIPSNDVVQIINQLETNGKVIRPALGVQMVNLTDLSTSQLEKVGLANTDLTSGV
LIVSTQPGLPADGKFEPYDVIIEIDGETIENKSDLQSELYKHQIGDTITVTYYRNNKKMTVDIKLTHSTDDLS

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=899267 R5H38_RS10245 WP_277837634.1 1983394..1984575(+) (htrA) [Streptococcus parasuis strain 221006]
ATGAAAAAATTATTGAAATTTGTTATTTTGTTTGTTGTTGGATTTTTAGGAGGAATTGGTGGGTATTACTTTGCTTCATC
AACTCTGACTCAAGGAAATTCTACTTCAAATCAAGCAAATACAACCAGTGTAAGCAATGTCCAATATAGCAACGATACTT
CCACCACTCAAGCTGTGGAAAAAGTTCAAGATGCTGTTGTCTCCGTTATCAATTATCAAACTCAATCATCGAATAGCGTC
AGTTCTATTTTTGGTAACATTGAAAGTTCAGATGAGCTAGCTGTTGCTGGAGAAGGTTCAGGTGTTATTTATAAAAAAGA
TGGTGATACAGCATATATTGTTACAAACAACCACGTAATTTCAGGTGCTGAAAAAATCGATATACTTTTGGCTTCTGGAG
AAAAGCTTAGCGGAGAACTCGTAGGTGCAGATACTTATTCAGACATTGCTGTTATCAAAATTGCTGCAGATAAAGTGACC
ACTATTGCTGAATTTGCTAATTCAGACACAATTAAAGTTGGAGAAACTGCGATTGCAATTGGTAGCCCATTAGGAAGTGT
CTATGCAAATACAGTAACCCAGGGGATTATTTCTAGTCTCAGTCGTACAGTAACTTCACAAACAGAAGATGGCCAAACAA
TCTCAACAAATGCTATCCAGACTGATGCAGCCATTAACCCAGGTAACTCAGGTGGACCACTTATCAATATTCAAGGACAA
GTTATCGGTATCAACTCAAGTAAAATAACCTCTAGTTCTGTCAGCAGTTCAGGAGTTGCAATAGAAGGAATGGGCTTTGC
AATTCCCTCAAATGATGTTGTACAGATTATTAATCAATTAGAAACAAATGGTAAAGTTATTCGTCCAGCTCTTGGTGTAC
AAATGGTCAATCTAACAGACCTATCTACTAGTCAATTAGAAAAAGTAGGATTAGCAAATACAGACTTAACATCTGGAGTA
CTAATTGTATCTACTCAACCAGGTTTGCCAGCTGATGGAAAATTTGAACCATATGATGTCATTATTGAAATCGATGGTGA
AACCATTGAAAATAAGAGTGATTTACAAAGTGAACTTTACAAGCATCAAATTGGCGACACCATAACTGTTACCTATTATA
GAAATAATAAGAAAATGACTGTTGACATTAAGTTGACACATTCAACGGATGATTTGTCATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(289-385)

Trypsin-like peptidase domain (Trypsin_2)

(99-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.111

100

0.616
  htrA Streptococcus gordonii str. Challis substr. CH1

60.406

100

0.606
  htrA Streptococcus pneumoniae Rx1

57.398

99.746

0.573
  htrA Streptococcus pneumoniae TIGR4

57.398

99.746

0.573
  htrA Streptococcus pneumoniae D39

57.398

99.746

0.573
  htrA Streptococcus pneumoniae R6

57.398

99.746

0.573
  htrA Streptococcus mitis NCTC 12261

56.888

99.746

0.567