Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   R5H38_RS10250 Genome accession   NZ_CP137602
Coordinates   1984638..1985396 (+) Length   252 a.a.
NCBI ID   WP_289647064.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1979638..1990396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS10235 - 1982032..1982715 (-) 684 WP_412080661.1 YoaK family protein -
  R5H38_RS10240 rlmH 1982722..1983201 (-) 480 WP_289647063.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  R5H38_RS10245 htrA 1983394..1984575 (+) 1182 WP_277837634.1 S1C family serine protease Regulator
  R5H38_RS10250 spo0J 1984638..1985396 (+) 759 WP_289647064.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 28979.47 Da        Isoelectric Point: 9.4558

>NTDB_id=899268 R5H38_RS10250 WP_289647064.1 1984638..1985396(+) (spo0J) [Streptococcus parasuis strain 221006]
MEELHYLKIKDIQANPYQPRLHFDEEKLLELAQSIKENGVIQPIIVRRSPVIGFELLAGERRLRASQLAGLTEIPAVIKH
LSDDDLLYQAIIENLQRSDLNPIEEAHSYEKLIEKGLTHDEIAQIMGKSRPYITNLLRLLHLSESTRKAVETGKITQGHA
RQLVALSEKQQAEWVQKIQEKDISVRKLETILSSKKKKTIRKSNQFISEEEEKLAKLLGTKVIIQQKKNGSGQLTIHFQN
IEEFERIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=899268 R5H38_RS10250 WP_289647064.1 1984638..1985396(+) (spo0J) [Streptococcus parasuis strain 221006]
ATGGAAGAACTACACTATCTCAAAATAAAAGACATTCAGGCCAATCCCTATCAACCAAGATTGCATTTTGATGAAGAAAA
ATTATTGGAATTAGCTCAATCTATCAAAGAAAATGGCGTCATTCAACCTATTATTGTTCGCAGATCACCGGTGATTGGTT
TTGAGTTACTTGCTGGTGAAAGACGATTAAGAGCTAGTCAACTAGCGGGATTAACAGAGATTCCAGCAGTCATCAAGCAT
CTATCTGATGATGATTTACTCTACCAAGCTATCATAGAAAACTTACAACGCTCTGACCTCAATCCTATTGAAGAGGCTCA
TTCCTACGAAAAGTTGATAGAAAAAGGCTTAACACATGATGAGATTGCTCAAATCATGGGAAAATCACGACCATATATCA
CTAATCTTCTTCGTTTACTCCATTTATCCGAATCTACGAGGAAAGCAGTAGAAACAGGAAAAATCACACAAGGGCATGCT
AGACAGCTAGTAGCACTATCAGAGAAACAACAAGCAGAATGGGTTCAAAAAATCCAAGAAAAGGATATCAGCGTACGAAA
GTTAGAAACAATACTATCCTCTAAAAAGAAAAAAACAATTAGAAAATCCAACCAATTTATTTCAGAAGAAGAAGAGAAAT
TAGCAAAACTACTTGGAACCAAAGTAATAATCCAACAAAAGAAAAATGGATCGGGACAACTGACTATTCACTTTCAAAAC
ATCGAAGAATTTGAAAGAATTATCAACAGTCTGAAATAG

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(145-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

54.724

100

0.552