Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   R5H38_RS00375 Genome accession   NZ_CP137602
Coordinates   62434..63336 (+) Length   300 a.a.
NCBI ID   WP_318150690.1    Uniprot ID   -
Organism   Streptococcus parasuis strain 221006     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 57434..68336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5H38_RS00345 - 57722..58468 (-) 747 WP_217374488.1 amino acid ABC transporter ATP-binding protein -
  R5H38_RS00350 - 58473..59150 (-) 678 WP_318150687.1 amino acid ABC transporter permease -
  R5H38_RS00355 - 59131..59790 (-) 660 WP_277844343.1 amino acid ABC transporter permease -
  R5H38_RS00360 ruvB 59918..60916 (+) 999 WP_217374489.1 Holliday junction branch migration DNA helicase RuvB -
  R5H38_RS00365 - 60916..61662 (+) 747 WP_318150688.1 GNAT family N-acetyltransferase -
  R5H38_RS00370 - 61664..62278 (+) 615 WP_318150689.1 HAD-IA family hydrolase -
  R5H38_RS00375 comR 62434..63336 (+) 903 WP_318150690.1 transcriptional regulator Regulator
  R5H38_RS00380 - 63545..64765 (+) 1221 WP_318150691.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  R5H38_RS00385 - 64949..66469 (+) 1521 WP_318150692.1 quinol oxidase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35892.84 Da        Isoelectric Point: 4.6833

>NTDB_id=899212 R5H38_RS00375 WP_318150690.1 62434..63336(+) (comR) [Streptococcus parasuis strain 221006]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRNQMLTIIYDEYYDELPEEEKIAIDAFQSTIDVFETRSNQFGKEILDDYFEQVHRKEKYSIND
LLIIRLYLEHIRNRDTDATIYHYFSSLVTHLPNQQEVMDSKELFILRDVILISIGILGDREDYEKIPSLFDALDKIMVLT
QDFQKKPILNLLKWKYELHVNKNRDAAQSYFEEATLFAKLIGNDYLVHKIKEDWEEDSRL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=899212 R5H38_RS00375 WP_318150690.1 62434..63336(+) (comR) [Streptococcus parasuis strain 221006]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAATTAGCAATTACGCGTGAAGAATTCTGTGAAGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCAAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGATTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAACAACGCAATCAAATGTTGACAATCATTTATGA
TGAATATTACGATGAGCTCCCAGAAGAAGAAAAAATAGCTATTGATGCTTTTCAGTCGACAATTGATGTATTTGAAACAC
GGTCTAATCAATTTGGCAAAGAGATTTTGGACGATTATTTTGAACAAGTTCATCGTAAAGAAAAGTATTCGATAAATGAC
TTGTTAATCATTCGACTATACCTTGAGCATATTAGAAATAGGGACACTGACGCAACAATCTATCACTATTTTTCCTCACT
TGTTACCCATCTGCCTAATCAACAGGAGGTAATGGATTCAAAAGAGTTATTTATTCTAAGGGATGTTATATTAATCTCAA
TAGGGATTTTAGGGGATCGAGAAGACTATGAGAAAATCCCGTCTCTTTTTGATGCTTTAGATAAAATAATGGTTTTAACT
CAAGATTTTCAAAAGAAACCTATTTTAAACTTATTGAAGTGGAAATACGAGCTCCACGTTAATAAGAACCGAGATGCCGC
ACAGAGTTACTTTGAAGAAGCTACCCTTTTTGCGAAGCTAATTGGAAATGATTATCTAGTTCACAAAATTAAAGAAGACT
GGGAAGAGGATTCACGACTTTAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis 05ZYH33

61.873

99.667

0.617
  comR Streptococcus suis P1/7

61.873

99.667

0.617
  comR Streptococcus suis D9

56.478

100

0.567
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

42.215

96.333

0.407
  comR Streptococcus mutans UA159

40.134

99.667

0.4
  comR Streptococcus pyogenes MGAS8232

39.13

99.667

0.39
  comR Streptococcus pyogenes MGAS315

36.213

100

0.363