Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R5Y34_RS08510 Genome accession   NZ_CP137530
Coordinates   1702473..1703969 (-) Length   498 a.a.
NCBI ID   WP_002224914.1    Uniprot ID   Q9K0Z6
Organism   Neisseria meningitidis strain EXNM678     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1697473..1708969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS08475 mraZ 1697485..1697940 (-) 456 WP_002224918.1 division/cell wall cluster transcriptional repressor MraZ -
  R5Y34_RS08480 - 1698219..1699430 (+) 1212 WP_010980791.1 class I SAM-dependent methyltransferase -
  R5Y34_RS08495 - 1700003..1700824 (-) 822 WP_002222025.1 undecaprenyl-diphosphate phosphatase -
  R5Y34_RS08500 dsbA1 1700857..1701501 (-) 645 WP_002224916.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  R5Y34_RS08505 ftsN 1701504..1702367 (-) 864 WP_002243994.1 cell division protein FtsN -
  R5Y34_RS08510 comM 1702473..1703969 (-) 1497 WP_002224914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5Y34_RS08515 - 1703983..1704303 (-) 321 WP_002212476.1 accessory factor UbiK family protein -
  R5Y34_RS08520 putP 1704786..1706312 (+) 1527 WP_002224913.1 sodium/proline symporter PutP -
  R5Y34_RS08525 - 1706402..1706569 (-) 168 WP_009346312.1 hypothetical protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53616.69 Da        Isoelectric Point: 6.7790

>NTDB_id=898858 R5Y34_RS08510 WP_002224914.1 1702473..1703969(-) (comM) [Neisseria meningitidis strain EXNM678]
MSLALVYSRALSGMNAPLVEVEAHLANGLPHFNIVGLPDMEVKESRDRVRAAIIQSGFEFPAKKITVNLAPADLPKESGR
FDLPIAIGILAASGQVAPEKLEEYEFAGELALSGLLRPVRGALAMAWQGMQAKRAFVLPEENAGQAAVMRGITVYGARSL
GEVAAHLNGIEPLAQTECQVPQMPFEHGGQPDLCDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLSQRLPGILPPL
TEDELVEVWALRSLLPNHQQQLDSNRPFRSPHHSASAAAMVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRAARQAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESVARYRSKISGPLLDRIDLTIEVPSLSAAELMQQ
EAGESSASVLERVIAARDKQYARQGKVNAALSVSELDTSARIQKEAQEALGGLLEKLSLSARSFHRIMRVARTLADLAGD
EEVGRSHVMKAIGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=898858 R5Y34_RS08510 WP_002224914.1 1702473..1703969(-) (comM) [Neisseria meningitidis strain EXNM678]
ATGTCGCTTGCCTTGGTTTACAGCCGCGCCTTGAGCGGTATGAATGCGCCGTTGGTCGAAGTGGAAGCCCACCTTGCCAA
CGGCCTGCCACATTTCAACATCGTCGGACTGCCCGATATGGAAGTAAAGGAAAGTCGCGACCGTGTCCGTGCCGCCATTA
TTCAAAGCGGTTTTGAATTCCCCGCCAAAAAAATTACCGTCAACCTCGCCCCCGCCGACCTGCCCAAAGAGTCGGGGCGT
TTCGATTTGCCGATTGCAATCGGCATCCTTGCCGCATCGGGGCAGGTTGCGCCCGAAAAACTGGAGGAATACGAGTTTGC
GGGGGAATTGGCACTGTCGGGGCTGTTGCGCCCCGTGCGTGGCGCGTTGGCGATGGCGTGGCAGGGTATGCAGGCAAAAC
GTGCATTTGTTTTGCCTGAAGAAAATGCAGGACAAGCCGCCGTGATGCGCGGCATTACCGTTTACGGCGCGCGCTCTTTG
GGCGAAGTCGCCGCCCATTTGAACGGCATCGAACCTTTGGCGCAAACCGAATGCCAAGTTCCTCAGATGCCGTTTGAACA
TGGCGGACAACCTGATTTGTGCGATGTGAAAGGTCAGCACACCGCGCGCCTTGCTTTGGAAATCGCTGCCGCAGGCGGAC
ACAGCCTCTTGATGATGGGTCCGCCGGGAACGGGCAAGTCTATGCTCTCCCAACGGCTGCCCGGCATCCTGCCGCCGCTG
ACCGAAGACGAATTGGTAGAAGTTTGGGCATTGCGTTCGCTCCTGCCCAACCACCAACAACAACTCGACAGCAACCGTCC
TTTCCGCAGTCCGCATCACAGCGCCAGCGCGGCGGCTATGGTCGGCGGCGGTTCGGATCCGCGTCCGGGCGAAATTTCAT
TGGCGCACCACGGCGTTTTGTTTTTGGACGAGCTGCCCGAGTTTGACCGCAAAGTTTTGGAAGTTTTGCGCGAACCGTTG
GAAAACGGCGAAATCCACATTTCCCGCGCGGCGCGCCAAGCCGTCTATCCTGCCAAATTCCAACTTGTTGCCGCCATGAA
CCCCTGCCCGTGCGGTTATCTCGGGCATCCCGTCAAACCCTGCCGCTGCACGCCCGAAAGCGTCGCGCGTTACCGCAGCA
AGATTTCCGGGCCGCTGCTCGACCGCATCGATTTGACCATCGAAGTCCCGAGCCTGTCCGCCGCCGAACTGATGCAGCAG
GAAGCAGGGGAAAGCAGCGCGTCCGTTTTGGAACGCGTTATCGCCGCTAGAGACAAACAATACGCACGGCAAGGCAAAGT
GAATGCCGCCTTGAGTGTCAGTGAACTCGACACATCCGCCCGCATTCAAAAAGAAGCGCAGGAAGCATTGGGCGGCCTGC
TGGAAAAACTCTCCCTTTCCGCCCGCAGCTTCCACCGCATTATGCGCGTGGCGCGTACATTGGCGGATTTGGCGGGCGAC
GAAGAAGTCGGCAGAAGCCACGTCATGAAAGCCATAGGTTTCCGTCGTGCTTTATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9K0Z6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.988

100

0.534
  comM Vibrio campbellii strain DS40M4

52.113

99.799

0.52
  comM Haemophilus influenzae Rd KW20

49.9

100

0.5
  comM Glaesserella parasuis strain SC1401

49.008

100

0.496
  comM Legionella pneumophila str. Paris

46.139

100

0.468
  comM Legionella pneumophila strain ERS1305867

46.139

100

0.468
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.026

100

0.44