Detailed information    

insolico Bioinformatically predicted

Overview

Name   dsbA1   Type   Machinery gene
Locus tag   R5Y34_RS08500 Genome accession   NZ_CP137530
Coordinates   1700857..1701501 (-) Length   214 a.a.
NCBI ID   WP_002224916.1    Uniprot ID   -
Organism   Neisseria meningitidis strain EXNM678     
Function   DNA binding and uptake; interact with PilQ (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1695857..1706501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R5Y34_RS08465 ftsL 1696242..1696505 (-) 264 WP_002220363.1 cell division protein FtsL -
  R5Y34_RS08470 rsmH 1696502..1697488 (-) 987 WP_002224919.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  R5Y34_RS08475 mraZ 1697485..1697940 (-) 456 WP_002224918.1 division/cell wall cluster transcriptional repressor MraZ -
  R5Y34_RS08480 - 1698219..1699430 (+) 1212 WP_010980791.1 class I SAM-dependent methyltransferase -
  R5Y34_RS08495 - 1700003..1700824 (-) 822 WP_002222025.1 undecaprenyl-diphosphate phosphatase -
  R5Y34_RS08500 dsbA1 1700857..1701501 (-) 645 WP_002224916.1 thiol:disulfide interchange protein DsbA/DsbL Machinery gene
  R5Y34_RS08505 ftsN 1701504..1702367 (-) 864 WP_002243994.1 cell division protein FtsN -
  R5Y34_RS08510 comM 1702473..1703969 (-) 1497 WP_002224914.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R5Y34_RS08515 - 1703983..1704303 (-) 321 WP_002212476.1 accessory factor UbiK family protein -
  R5Y34_RS08520 putP 1704786..1706312 (+) 1527 WP_002224913.1 sodium/proline symporter PutP -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23983.98 Da        Isoelectric Point: 9.8294

>NTDB_id=898857 R5Y34_RS08500 WP_002224916.1 1700857..1701501(-) (dsbA1) [Neisseria meningitidis strain EXNM678]
MKLKHLLPLLLSAVLSAQAYALTEGEDYLVLDKPIPQEQSGKIEVLEFFGYFCVHCHHFDPLLLKLGKALPSDAYLRTEH
VVWQPEMLGLARMAAAVNLSGLKYQANPAVFKAVYEQKIRLENRSVAGKWALSQKGFDGKKLMRAYDSPEAAAAALKMQK
LTEQYRIDSTPTVIVGGKYRVIFNNGFDGGVHTIKELVAKVREERKRQTPAVQK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=898857 R5Y34_RS08500 WP_002224916.1 1700857..1701501(-) (dsbA1) [Neisseria meningitidis strain EXNM678]
ATGAAGCTCAAACATCTGTTGCCGCTGCTGCTGTCGGCAGTGTTGTCCGCGCAGGCATATGCCCTGACGGAAGGGGAAGA
CTATCTTGTGTTGGATAAACCCATTCCTCAAGAACAGTCGGGTAAAATTGAGGTTTTGGAATTTTTCGGCTATTTCTGCG
TACATTGCCATCATTTCGATCCTTTGTTATTGAAACTGGGCAAGGCATTGCCGTCTGATGCCTATTTGAGGACGGAGCAC
GTGGTCTGGCAGCCTGAAATGCTCGGTTTGGCTAGGATGGCGGCTGCCGTCAATTTGTCGGGTTTGAAATATCAGGCAAA
CCCTGCTGTGTTTAAAGCAGTTTACGAACAAAAAATCCGCTTGGAAAACAGGTCGGTTGCCGGAAAATGGGCTTTGTCTC
AAAAAGGCTTTGACGGCAAAAAACTGATGCGCGCCTATGATTCCCCCGAAGCTGCCGCCGCCGCATTAAAAATGCAGAAA
CTGACGGAACAATACCGCATCGACAGCACGCCGACCGTTATTGTCGGCGGAAAATACCGCGTTATCTTCAATAACGGCTT
TGACGGCGGCGTTCATACGATTAAAGAATTGGTTGCCAAAGTCAGGGAAGAACGCAAGCGTCAGACCCCTGCTGTACAGA
AATAG

Domains

Predicted by InterproScan.

Thioredoxin (Thioredoxin_4)

(42-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dsbA1 Neisseria meningitidis MC58

57.219

87.383

0.5
  dsbA2 Neisseria meningitidis MC58

51.613

86.916

0.449