NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	AAFX13_RS13965	Genome accession	NZ_CP155084
Coordinates	1130470..1131096 (+)	Length	208 a.a.
NCBI ID	WP_005460620.1	Uniprot ID	-
Organism	Vibrio parahaemolyticus strain TBV028
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1125470..1136096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAFX13_RS13950 (AAFX13_13945)	-	1126732..1128534 (-)	1803	WP_031816459.1	ATP-binding protein	-
AAFX13_RS13955 (AAFX13_13950)	-	1128581..1128766 (+)	186	WP_017448702.1	hypothetical protein	-
AAFX13_RS13960 (AAFX13_13955)	tig	1129060..1130364 (+)	1305	WP_005460612.1	trigger factor	-
AAFX13_RS13965 (AAFX13_13960)	clpP	1130470..1131096 (+)	627	WP_005460620.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
AAFX13_RS13970 (AAFX13_13965)	clpX	1131168..1132448 (+)	1281	WP_005460618.1	ATP-dependent protease ATP-binding subunit ClpX	Regulator
AAFX13_RS13975 (AAFX13_13970)	lon	1132580..1134931 (+)	2352	WP_015296438.1	endopeptidase La	-
AAFX13_RS13980 (AAFX13_13975)	-	1135124..1135396 (+)	273	WP_005382341.1	HU family DNA-binding protein	-

Sequence

Protein

Download Length: 208 a.a. Molecular weight: 22927.23 Da Isoelectric Point: 4.8520

                                >NTDB_id=895995 AAFX13_RS13965 WP_005460620.1 1130470..1131096(+) (clpP) [Vibrio parahaemolyticus strain TBV028]

MSYQEKNAMSPIMDALVPMVVEQTSRGERSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSP

GGSVTAGMSIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAAGKRYVLPNSRVMIHQPLGGFQGQASDIQIHAQEILTIK

QKLNNLLAEHTGQPLEVIERDTDRDNFMSAEQAVEYGIVDAVLSHRGA

Nucleotide

Download Length: 627 bp

                                >NTDB_id=895995 AAFX13_RS13965 WP_005460620.1 1130470..1131096(+) (clpP) [Vibrio parahaemolyticus strain TBV028]

ATGAGCTACCAAGAAAAAAATGCAATGTCGCCAATTATGGACGCACTAGTACCAATGGTGGTTGAACAAACTTCCCGAGG

CGAGCGTTCTTACGACATCTACTCACGTCTACTTAAAGAGCGCGTGATTTTTTTAACTGGTCAAGTGGAAGACCACATGG

CAAACCTTGTCGTGGCTCAGCTACTTTTCCTAGAATCTGAAAATCCAGATAAAGACATTTTCCTATACATCAACTCTCCA

GGCGGCAGCGTAACTGCAGGTATGTCAATTTACGACACAATGCAGTTTATTAAACCAAATGTAAGCACTGTATGTATGGG

GCAAGCTTGTTCTATGGGCGCATTCCTGCTTGCAGGTGGTGCTGCTGGTAAACGTTACGTTCTTCCTAACTCACGTGTGA

TGATCCACCAACCACTAGGTGGTTTCCAGGGTCAAGCTTCTGATATCCAAATCCATGCTCAGGAAATCCTGACCATTAAA

CAGAAGCTAAACAACCTGTTAGCAGAACATACTGGCCAGCCTCTTGAAGTGATTGAACGCGATACCGATCGTGACAACTT

CATGTCAGCAGAGCAGGCTGTGGAATACGGTATCGTGGATGCAGTGTTGAGCCATCGCGGCGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(26-205)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	69.474	91.346	0.635
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	63.83	90.385	0.577
clpP	Streptococcus pneumoniae R6	53.646	92.308	0.495
clpP	Streptococcus pneumoniae TIGR4	53.646	92.308	0.495
clpP	Streptococcus pneumoniae D39	53.646	92.308	0.495
clpP	Streptococcus pneumoniae Rx1	53.646	92.308	0.495
clpP	Lactococcus lactis subsp. cremoris KW2	51.795	93.75	0.486
clpP	Streptococcus thermophilus LMG 18311	52.083	92.308	0.481
clpP	Streptococcus thermophilus LMD-9	52.083	92.308	0.481
clpP	Streptococcus mutans UA159	51.295	92.788	0.476
clpP	Streptococcus pyogenes JRS4	51.562	92.308	0.476
clpP	Streptococcus pyogenes MGAS315	51.562	92.308	0.476
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	50.256	93.75	0.471

Detailed information NTG0895995