Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   AAFX13_RS13635 Genome accession   NZ_CP155084
Coordinates   1056757..1060128 (+) Length   1123 a.a.
NCBI ID   WP_031816482.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TBV028     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1051757..1065128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX13_RS13610 (AAFX13_13605) sucC 1051847..1053013 (+) 1167 WP_031816483.1 ADP-forming succinate--CoA ligase subunit beta -
  AAFX13_RS13615 (AAFX13_13610) sucD 1053013..1053885 (+) 873 WP_005486020.1 succinate--CoA ligase subunit alpha -
  AAFX13_RS13620 (AAFX13_13615) znuB 1054023..1054808 (-) 786 WP_005455500.1 zinc ABC transporter permease subunit ZnuB -
  AAFX13_RS13625 (AAFX13_13620) znuC 1054801..1055589 (-) 789 WP_025498707.1 zinc ABC transporter ATP-binding protein ZnuC -
  AAFX13_RS13630 (AAFX13_13625) znuA 1055668..1056546 (+) 879 WP_021454320.1 zinc ABC transporter substrate-binding protein ZnuA -
  AAFX13_RS13635 (AAFX13_13630) tfoS 1056757..1060128 (+) 3372 WP_031816482.1 AraC family transcriptional regulator Regulator
  AAFX13_RS13640 (AAFX13_13635) - 1061006..1061233 (+) 228 WP_005455496.1 ferrous iron transport protein A -
  AAFX13_RS13645 (AAFX13_13640) feoB 1061233..1063509 (+) 2277 WP_005486014.1 Fe(2+) transporter permease subunit FeoB -
  AAFX13_RS13650 (AAFX13_13645) - 1063506..1063736 (+) 231 WP_005455490.1 FeoC-like transcriptional regulator -
  AAFX13_RS13655 (AAFX13_13650) - 1063855..1064283 (-) 429 WP_005455485.1 HIT family protein -

Sequence

Protein


Download         Length: 1123 a.a.        Molecular weight: 126819.40 Da        Isoelectric Point: 5.6541

>NTDB_id=895993 AAFX13_RS13635 WP_031816482.1 1056757..1060128(+) (tfoS) [Vibrio parahaemolyticus strain TBV028]
MLRQLVLIFWGLFISSQAFALNNANAIFYPLPTQVKGTFIAAKKLFLGEQGGLWIHDVHGRVLFYDGQNVLPKSGSFLQT
TAKQLAYHQGSFWTFVENEVYQTYPNKERQLVFSLNPGSQIRKIGSSGDYIWVSDGAHFYTYNIKTNELDSFSLLQLYQH
SNNSYVYINDAILVETKWALATTSGVYLSEGNKFDHVISSGQNYIEKVYYSHTRREILVGTLKGALIFNIYEPKKEIVKI
GGSHVLTFSETNQEYWVGTEHGLYLYSFLTGEVTEVEPASFLELELDSTKIYSLLSDNMGGMWIATNQGIRYYSLFSKKF
ERVTFSSYDSQTLSGRIRQTVTGPDGVLWFADDRKLYRSGAEGIVKVLELDSQINEFAFQRGMLWLATSKGLEIFQLEGL
KKISFPYLQVMAGHAVEHIALDDTNRLWVSSGYQLYNVDIDKQSVRNFGSEWIVSQYLPAKVTRLYDTEDKLFIGTDHGI
YEYDDERIRFNRFSEKYGESLDIVTAADGSQWFASSYGLFKTVAGGEAKQVLEMSVANARPACLISDAKGVWLASSVGLS
YYRLSGELVKHYSSASGLINNEFIPGICSVVKRTEDGERELVLGSKYGLVKAEASKLLVSNPPESRFIVSQVMLENDVIQ
VGSSDLDGIKLPYGSSLSFLFGIMPKPDSQNLYYRLNEDDRWQTLEGGQLTLEHLNSGEYHLQVSNESQVTAGVVGLESR
FEVLKPWYLSQLAILGFLVSISTLIGLIMYWRSRYVMQANRELAAQVTLKTNQLRHQSRVLLTSNQQLRKQIQVRNLLVD
HVAQSIKTSVDYISSKLPVERDSITEDHVSKTYWQLNELKSAPGDASNGSQNYNLSQITQSVVDVWRDDFAKAGISVELE
DENKSSRIALESFNLDVIFNSIFANIIKRSFRGQAVKVMLEEGRDIVSLSFLDYGTQLPNKLSLSRPANNNVDLSIDNLS
QLVTVSGGHLAVFTSDAQNKIEITWPMAKELSHVEEVLPEFVPENIVEEKASPENEWLQKVYQLVAEHYHDPDFGTATAA
KMLFMSERSLQRRFKSASSRTLKDYLTEVRLETACEQLLAGEKISEVAFNCGFNDPSYFSQKFKLHFGLPPSKFAMEQDS
HAN

Nucleotide


Download         Length: 3372 bp        

>NTDB_id=895993 AAFX13_RS13635 WP_031816482.1 1056757..1060128(+) (tfoS) [Vibrio parahaemolyticus strain TBV028]
TTGCTTCGCCAACTTGTCCTGATTTTCTGGGGACTCTTCATATCATCTCAAGCATTTGCGCTGAACAACGCAAATGCCAT
CTTTTACCCTTTGCCTACTCAGGTTAAGGGCACTTTTATTGCTGCGAAAAAATTGTTCTTGGGCGAGCAAGGTGGGCTAT
GGATTCATGATGTACATGGCCGCGTTCTTTTTTATGACGGCCAGAATGTTCTGCCAAAATCAGGCAGTTTTTTGCAAACG
ACCGCAAAGCAGCTTGCGTATCATCAAGGGTCATTCTGGACCTTTGTCGAAAATGAGGTTTATCAGACCTACCCAAACAA
AGAAAGGCAGTTGGTCTTTAGCCTTAACCCCGGGTCGCAAATTAGAAAAATAGGTTCATCAGGTGATTATATTTGGGTAA
GTGATGGCGCACATTTTTATACCTACAACATCAAAACCAATGAACTTGATTCATTTTCACTGCTTCAACTTTATCAACAT
AGCAATAATAGTTATGTGTACATCAATGATGCGATTCTGGTCGAAACCAAATGGGCGTTGGCTACAACATCTGGTGTCTA
TCTCTCTGAAGGTAATAAATTTGATCATGTGATTTCATCCGGTCAAAACTACATTGAAAAAGTGTACTACTCGCATACGA
GACGCGAGATATTGGTCGGCACCTTAAAAGGCGCGTTGATCTTCAATATTTACGAGCCGAAAAAAGAGATCGTCAAAATT
GGCGGATCCCACGTACTGACGTTTTCAGAGACCAATCAAGAGTATTGGGTTGGTACTGAGCACGGTTTGTATCTCTATTC
GTTTTTAACAGGTGAAGTTACTGAAGTTGAGCCAGCGAGCTTCTTAGAGTTAGAGCTCGATAGCACTAAAATTTATTCCT
TACTTAGCGACAACATGGGCGGAATGTGGATAGCGACCAACCAAGGCATTCGTTATTACTCTTTGTTCAGCAAAAAATTT
GAGCGAGTCACCTTTAGTAGTTATGACTCGCAAACCTTATCTGGTCGTATCAGACAAACGGTAACAGGGCCAGATGGTGT
GCTTTGGTTTGCCGATGACCGCAAACTGTATCGTTCTGGCGCGGAAGGGATTGTAAAAGTCTTAGAATTAGATTCTCAAA
TTAACGAATTTGCGTTCCAACGAGGCATGTTATGGCTTGCCACTTCAAAAGGCTTGGAGATATTCCAACTGGAGGGGCTG
AAAAAGATTAGCTTCCCTTATTTACAAGTAATGGCTGGGCATGCTGTTGAGCACATTGCTCTAGACGACACAAACCGTTT
GTGGGTATCCAGCGGTTACCAACTTTACAACGTTGATATCGACAAGCAATCCGTCAGAAACTTTGGTAGCGAATGGATCG
TGAGTCAGTACTTACCAGCTAAAGTGACGCGCTTATATGATACCGAAGATAAACTTTTTATTGGTACGGACCACGGCATT
TATGAATACGATGATGAACGTATTCGTTTCAATCGTTTCTCGGAAAAATATGGCGAGTCGCTAGATATAGTGACAGCGGC
GGATGGCTCTCAGTGGTTTGCCTCTTCCTATGGGTTGTTTAAAACAGTGGCTGGTGGAGAAGCCAAGCAAGTCTTGGAGA
TGAGTGTTGCGAATGCTCGTCCGGCGTGTTTGATCAGTGATGCGAAAGGTGTGTGGCTTGCATCTTCTGTTGGGTTGAGT
TACTACCGATTGTCCGGTGAGTTAGTTAAACACTATTCATCTGCATCGGGCTTGATTAATAATGAGTTTATTCCTGGGAT
ATGTAGCGTAGTGAAACGCACAGAAGATGGCGAACGTGAACTTGTTTTAGGCTCAAAATATGGATTAGTTAAAGCAGAGG
CTTCAAAACTATTGGTGTCAAACCCGCCAGAATCCCGCTTTATTGTTAGCCAAGTGATGCTTGAAAACGATGTAATCCAA
GTGGGGAGTTCCGACCTTGATGGGATTAAGCTGCCTTATGGTTCTTCGCTGAGTTTTCTCTTTGGCATCATGCCTAAACC
GGATAGCCAGAACCTTTACTACCGCTTAAACGAAGACGACCGATGGCAGACTTTAGAAGGGGGTCAGTTAACCTTAGAGC
ACCTCAACTCTGGGGAATACCACCTTCAAGTGAGTAACGAGTCACAGGTAACGGCGGGCGTTGTTGGCTTAGAGTCTCGT
TTTGAAGTGCTCAAACCATGGTATCTATCCCAGCTTGCGATATTAGGCTTTCTCGTCTCAATTTCTACGCTTATCGGCCT
TATCATGTACTGGCGTTCACGATATGTTATGCAAGCAAACCGAGAGCTTGCTGCTCAGGTCACTCTAAAGACCAACCAAC
TAAGGCATCAAAGCCGCGTATTATTGACGAGTAACCAACAGTTAAGAAAGCAAATTCAGGTTAGAAATCTATTAGTTGAC
CATGTTGCTCAGTCTATAAAAACCAGCGTCGATTATATCTCGTCAAAATTGCCAGTGGAGAGAGATTCCATCACAGAGGA
TCACGTATCAAAAACTTACTGGCAGCTGAATGAGCTTAAAAGTGCTCCAGGTGATGCGAGTAACGGCAGTCAAAACTACA
ACCTAAGCCAAATTACGCAATCTGTGGTGGATGTGTGGCGAGACGATTTCGCCAAAGCGGGGATCTCTGTGGAGTTAGAG
GATGAGAACAAGTCTAGCCGTATTGCTCTAGAGAGTTTCAATCTGGATGTTATCTTTAACAGTATCTTTGCCAACATCAT
CAAGCGCTCTTTCCGAGGTCAAGCCGTTAAAGTGATGCTAGAAGAGGGACGGGACATTGTCTCACTCAGCTTTTTGGATT
ACGGAACGCAATTGCCAAATAAACTTTCTCTAAGTCGTCCTGCGAATAACAATGTGGACTTGAGTATCGACAATCTTTCG
CAACTGGTTACGGTGAGTGGAGGGCACTTAGCGGTGTTCACTTCTGATGCGCAGAATAAAATTGAGATTACTTGGCCGAT
GGCAAAAGAGTTGAGCCATGTTGAGGAAGTTTTACCAGAATTTGTGCCAGAAAACATCGTAGAAGAGAAAGCCAGTCCAG
AAAATGAGTGGCTACAAAAGGTCTATCAGTTAGTTGCTGAGCATTACCATGACCCTGATTTTGGCACTGCGACAGCGGCT
AAGATGTTATTTATGTCTGAACGTAGTTTACAACGCCGCTTTAAGTCGGCCTCGTCAAGAACGTTAAAAGATTATTTAAC
GGAGGTACGGTTAGAAACTGCTTGTGAACAGTTACTCGCAGGTGAAAAAATCAGTGAAGTGGCTTTCAATTGCGGTTTCA
ATGATCCCTCTTACTTCAGCCAGAAGTTCAAGTTGCACTTTGGTCTACCTCCATCAAAGTTCGCGATGGAACAAGACAGT
CACGCAAATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix domain (HTH_18)

(1040-1114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

38.535

100

0.394