Detailed information    

insolico Bioinformatically predicted

Overview

Name   micA   Type   Regulator
Locus tag   R4712_RS10600 Genome accession   NZ_CP137110
Coordinates   2038552..2039256 (+) Length   234 a.a.
NCBI ID   WP_000722076.1    Uniprot ID   Q9S1K0
Organism   Streptococcus pneumoniae strain 16H2041     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2033552..2044256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R4712_RS10575 coaC 2033842..2034393 (-) 552 WP_001284124.1 phosphopantothenoylcysteine decarboxylase -
  R4712_RS10580 coaB 2034405..2035094 (-) 690 WP_000699500.1 phosphopantothenate--cysteine ligase -
  R4712_RS10585 - 2035324..2036994 (+) 1671 WP_000845279.1 formate--tetrahydrofolate ligase -
  R4712_RS10590 - 2037100..2037225 (-) 126 WP_001818232.1 hypothetical protein -
  R4712_RS10595 mutY 2037322..2038497 (+) 1176 WP_000886145.1 A/G-specific adenine glycosylase -
  R4712_RS10600 micA 2038552..2039256 (+) 705 WP_000722076.1 response regulator YycF Regulator
  R4712_RS10605 micB 2039249..2040598 (+) 1350 WP_000886210.1 cell wall metabolism sensor histidine kinase VicK Regulator
  R4712_RS10610 vicX 2040600..2041409 (+) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  R4712_RS10615 relB 2041500..2041742 (+) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  R4712_RS10620 - 2041744..2041998 (+) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  R4712_RS10625 - 2042045..2042821 (+) 777 WP_044791794.1 potassium channel family protein -
  R4712_RS10630 cpoA 2042982..2044025 (+) 1044 WP_000412280.1 alpha-galactosylglucosyldiacylglycerol synthase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26815.63 Da        Isoelectric Point: 4.7164

>NTDB_id=895910 R4712_RS10600 WP_000722076.1 2038552..2039256(+) (micA) [Streptococcus pneumoniae strain 16H2041]
MKKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSA
KDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQPMPVDGQEADSKPQPIQIGDLEIVPDAYVAKKYGEELDLT
HREFELLYHLASHTGQVITREHLLETVWGYDYFGDVRTVDVTVRRLREKIEDTPSRPEYILTRRGVGYYMRNNA

Nucleotide


Download         Length: 705 bp        

>NTDB_id=895910 R4712_RS10600 WP_000722076.1 2038552..2039256(+) (micA) [Streptococcus pneumoniae strain 16H2041]
ATGAAAAAAATACTAATTGTAGATGATGAGAAACCAATCTCGGATATTATCAAGTTTAATATGACCAAGGAAGGTTACGA
AGTTGTAACTGCTTTTAATGGTCGTGAAGCGCTAGAGCAATTTGAAGCAGAGCAACCAGATATTATTATTCTGGATTTGA
TGCTTCCAGAAATTGATGGTTTAGAAGTTGCTAAGACCATTCGTAAGACAAGCAGTGTGCCCATTCTTATGCTTTCAGCC
AAAGATAGTGAATTTGATAAGGTTATCGGTTTGGAACTTGGGGCAGATGACTATGTAACGAAACCCTTCTCCAATCGTGA
GTTGCAGGCACGTGTTAAAGCTCTTCTGCGTCGTTCTCAACCTATGCCAGTAGATGGGCAGGAAGCAGATAGTAAACCTC
AACCTATCCAAATTGGGGATTTAGAAATTGTTCCAGACGCCTACGTGGCTAAAAAATATGGCGAAGAACTAGACTTAACC
CATCGTGAATTTGAGCTTTTGTATCATTTAGCATCGCATACAGGTCAAGTCATCACGCGCGAACACTTGCTTGAGACTGT
CTGGGGTTATGACTATTTTGGTGATGTCCGTACAGTTGATGTGACTGTACGACGTCTGCGTGAGAAGATTGAAGATACGC
CCAGCCGACCAGAGTATATCTTGACGCGCCGTGGTGTAGGGTATTACATGAGAAATAATGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 1NXS
  PDB 2A9O
  PDB 2A9P

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micA Streptococcus pneumoniae Cp1015

100

100

1
  vicR Streptococcus mutans UA159

78.541

99.573

0.782
  covR Streptococcus salivarius strain HSISS4

44.156

98.718

0.436
  covR Lactococcus lactis subsp. lactis strain DGCC12653

43.478

98.291

0.427
  scnR Streptococcus mutans UA159

38.197

99.573

0.38