Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABC966_RS08955 Genome accession   NZ_CP155062
Coordinates   1888462..1889202 (-) Length   246 a.a.
NCBI ID   WP_000216874.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC130-MRSA-XI     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1883462..1894202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC966_RS08930 (ABC966_08930) hemH 1884339..1885262 (-) 924 WP_000162881.1 ferrochelatase -
  ABC966_RS08935 (ABC966_08935) hemE 1885320..1886357 (-) 1038 WP_000233534.1 uroporphyrinogen decarboxylase -
  ABC966_RS08940 (ABC966_08940) - 1886347..1886433 (-) 87 WP_031875110.1 hypothetical protein -
  ABC966_RS08945 (ABC966_08945) traP 1886619..1887122 (+) 504 WP_000737980.1 signal transduction protein TRAP -
  ABC966_RS08950 (ABC966_08950) - 1887246..1888469 (-) 1224 WP_001245758.1 ABC transporter permease -
  ABC966_RS08955 (ABC966_08955) pptA 1888462..1889202 (-) 741 WP_000216874.1 ABC transporter ATP-binding protein Regulator
  ABC966_RS08960 (ABC966_08960) - 1889336..1889758 (+) 423 WP_000004981.1 HIT family protein -
  ABC966_RS08965 (ABC966_08965) - 1889900..1890265 (+) 366 WP_000648117.1 YtxH domain-containing protein -
  ABC966_RS08970 (ABC966_08970) - 1890998..1891555 (+) 558 WP_000477959.1 DUF3267 domain-containing protein -
  ABC966_RS08975 (ABC966_08975) - 1891760..1892722 (+) 963 WP_000782119.1 foldase protein PrsA -
  ABC966_RS08980 (ABC966_08980) yhaM 1892842..1893783 (-) 942 WP_001244175.1 3'-5' exoribonuclease YhaM -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27687.02 Da        Isoelectric Point: 4.6672

>NTDB_id=895861 ABC966_RS08955 WP_000216874.1 1888462..1889202(-) (pptA) [Staphylococcus aureus strain CC130-MRSA-XI]
MTVKVEQLTGGYGKRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSISDININDDIEAYRRKLSYI
PESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTFRLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEP
FLGLDPLGIQSMLDLMVEKKNEGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQ
GGDVHA

Nucleotide


Download         Length: 741 bp        

>NTDB_id=895861 ABC966_RS08955 WP_000216874.1 1888462..1889202(-) (pptA) [Staphylococcus aureus strain CC130-MRSA-XI]
ATGACAGTTAAAGTAGAACAGCTTACAGGTGGATATGGAAAACGCCCTGTAATTAAAGATATAAATTTTGAATTAAACAA
AGGCGAAATCGTTGGACTTATTGGCCTTAATGGCGCTGGTAAGAGTACAACGATTAAACATATGCTAGGATTGCTTACAC
CTATGGAAGGATCTCTATCAATTTCAGATATCAACATTAATGATGACATAGAGGCTTATAGAAGAAAGTTATCTTATATT
CCGGAATCACCGGTTATTTATGAAGAACTCACATTAGAGGAACACATTGAGATGACAGCAATGGCATATGATATTGATCG
TGATGAAGCGATGAATCGAGCAATGCCATTATTAAAGACATTCCGTTTAGAAAATGAATTGAAAGTTTTTCCGAGTCATT
TTTCTAAGGGGATGAAACAAAAAGTCATGATTATTTGTGCGTTTATCGTTAATCCCGAATTGTATATTATAGACGAACCA
TTCCTTGGTCTAGATCCATTAGGAATTCAATCCATGTTAGATTTAATGGTTGAAAAGAAAAATGAAGGTAGAACCGTTCT
AATGAGTACACATATTTTAGCAACAGCTGAACGTTATTGTGATCGTTTTATCATACTAGACGAAGGTGAAGTCGTTGCAT
TTGGAGATTTAGAAGCATTGAGACAACAAACTGGCTTACATAATCAAACGTTAGACGATATATATATTCATGTGACGCAA
GGTGGAGATGTACATGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

57.322

97.154

0.557
  pptA Streptococcus thermophilus LMD-9

56.067

97.154

0.545